Factsheet for TraesCS4A01G031800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G274200.1	Wheat	cytosol	98.43	98.81
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	98.23	98.62
TraesCS4D01G272900.1	Wheat	cytosol	97.05	97.05
Zm00001d027728_P001	Maize	extracellular, plasma membrane	86.22	86.9
EER95473	Sorghum	cytosol	84.84	86.37
TraesCS4A01G340500.1	Wheat	cytosol	79.13	84.1
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	83.27	83.76
GSMUA_Achr10P...	Banana	nucleus	66.73	70.33
VIT_00s2262g00010.t01	Wine grape	cytosol	31.5	65.57
GSMUA_Achr6P14220_001	Banana	cytosol	66.73	64.82
KRG99590	Soybean	endoplasmic reticulum, nucleus	57.87	60.25
Solyc04g082790.2.1	Tomato	plastid	58.27	59.32
KRG93607	Soybean	nucleus	56.89	58.38
Solyc10g085790.1.1	Tomato	nucleus	58.07	58.07
PGSC0003DMT400022137	Potato	nucleus	58.46	57.78
CDX67556	Canola	cytosol	53.54	57.63
CDY13319	Canola	cytosol	55.51	57.55
CDX95397	Canola	cytosol	55.71	57.29
Bra040687.1-P	Field mustard	cytosol	55.71	57.06
Bra028547.1-P	Field mustard	cytosol	55.12	57.03
CDX76225	Canola	cytosol	55.51	56.85
AT3G53110.1	Thale cress	cytosol	54.72	56.05
VIT_08s0007g04400.t01	Wine grape	cytosol	56.3	55.75
VIT_08s0007g04430.t01	Wine grape	cytosol	31.89	52.09
TraesCS2A01G552800.1	Wheat	cytosol	25.39	34.96
TraesCS7A01G419400.1	Wheat	cytosol	27.56	33.82
TraesCS6A01G416700.1	Wheat	nucleus	26.77	32.93
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	27.56	31.67
TraesCS1A01G443400.1	Wheat	cytosol	24.02	28.11
TraesCS3A01G200100.1	Wheat	cytosol	23.43	27.29
TraesCS2A01G370200.2	Wheat	cytosol	23.82	24.15
TraesCS1A01G174600.1	Wheat	cytosol	24.8	24.0
TraesCS6A01G236800.1	Wheat	cytosol	24.02	23.33
TraesCS6A01G186600.1	Wheat	cytosol	20.87	19.27
TraesCS6A01G234000.1	Wheat	mitochondrion	19.88	16.81
TraesCS6A01G186800.1	Wheat	cytosol	22.83	9.11

Protein Annotations

MapMan:16.11.3.1	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF331	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4A01G031800	EnsemblPlants:TraesCS4A01G031800.1	TIGR:cd00079	SEG:seg

Description

No Description!

Coordinates

chr4A:-:24764273..24768312

Molecular Weight (calculated)

56069.9 Da

IEP (calculated)

5.074

GRAVY (calculated)

-0.356

Length

508 amino acids

Sequence
(BLAST)

001: MADAGAAKPE PEKKSWADVE EEEEAKAKAE AEAELAAAAS SASSSSAPIE PAVEAQAKQI EALSLSVPDD DGGGPEGPPL LDDSDDSQIQ AVTSGGTVYE
101: SATTFEDVKL TPELLKGLHD EMGFSRPSKI QAITLPMILT PPHRDLVAQA HNGSGKTTCF VLGMLSRVDP NRKVPQAICI CPTRELAQQN KSVLMRMGKF
201: TGITCACAIP SSQKEYMPIS KMAPVTDQVV IGTSGTLTKW ITHKKLATRE IKILVFDEAD HMLAEEGFKT DSLRIMKDIQ NSAGGCQVLL FSATFNEKVK
301: EFVTRVIKDG NQIFVKKEDL TLEKVKQYKV RVPDEAAKIE VIRDKIFEFG QKVGQVIIFV RTRNSTKNVH NALTKEDYVC SSIQGSLDQA EREKVIQEFK
401: DGYTKVLIST DVLARGFDQA QVNLVINYDM PIKYNTRDEP DYEVYLHRIG RAGRFGRKGA VFNLLCGQTD EVVMTKIEDY FQHKVPEVPN WKSEDNFETA
501: LKDAGLLE

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.