Factsheet for Bra040687.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76225	Canola	cytosol	99.6	99.6
Bra028547.1-P	Field mustard	cytosol	90.12	91.04
AT3G53110.1	Thale cress	cytosol	89.11	89.11
VIT_00s2262g00010.t01	Wine grape	cytosol	32.86	66.8
KRG99590	Soybean	endoplasmic reticulum, nucleus	63.71	64.75
KRG93607	Soybean	nucleus	63.51	63.64
Solyc04g082790.2.1	Tomato	plastid	61.29	60.92
GSMUA_Achr10P...	Banana	nucleus	59.07	60.79
VIT_08s0007g04400.t01	Wine grape	cytosol	61.9	59.84
Solyc10g085790.1.1	Tomato	nucleus	61.29	59.84
PGSC0003DMT400022137	Potato	nucleus	61.69	59.53
EER95473	Sorghum	cytosol	56.85	56.51
TraesCS4A01G340500.1	Wheat	cytosol	54.44	56.49
TraesCS5D01G532700.1	Wheat	cytosol	54.23	56.39
TraesCSU01G076700.1	Wheat	cytosol	54.23	56.39
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	57.46	56.32
TraesCS5B01G534600.1	Wheat	cytosol	54.64	56.22
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	57.06	56.04
TraesCS4B01G274200.1	Wheat	cytosol	57.06	55.93
TraesCS4A01G031800.1	Wheat	cytosol	57.06	55.71
GSMUA_Achr6P14220_001	Banana	cytosol	58.67	55.64
TraesCS4D01G272900.1	Wheat	cytosol	56.65	55.31
Zm00001d027728_P001	Maize	extracellular, plasma membrane	56.05	55.16
VIT_08s0007g04430.t01	Wine grape	cytosol	32.86	52.41
Bra030892.1-P	Field mustard	cytosol	5.24	38.24
Bra027387.1-P	Field mustard	cytosol	28.43	34.22
Bra030893.1-P	Field mustard	cytosol	27.82	33.5
Bra021517.1-P	Field mustard	cytosol	27.82	33.5
Bra014365.1-P	Field mustard	cytosol	27.82	33.5
Bra029124.1-P	Field mustard	cytosol	27.62	33.41
Bra001530.1-P	Field mustard	cytosol	28.02	33.41
Bra032127.1-P	Field mustard	cytosol	27.42	33.33
Bra038231.1-P	Field mustard	cytosol	27.22	33.09
Bra022449.1-P	Field mustard	cytosol	27.22	33.09
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.23	32.79
Bra037977.1-P	Field mustard	cytosol	27.22	32.77
Bra008527.1-P	Field mustard	cytosol	20.97	31.52
Bra014267.1-P	Field mustard	cytosol	25.2	30.94
Bra023311.1-P	Field mustard	cytosol	26.41	30.68
Bra023312.1-P	Field mustard	cytosol	26.81	30.5
Bra008984.1-P	Field mustard	cytosol	25.6	29.81
Bra007587.1-P	Field mustard	cytosol	26.81	28.12
Bra003442.1-P	Field mustard	cytosol	26.61	27.67
Bra008983.1-P	Field mustard	cytosol	26.01	27.33
Bra037351.1-P	Field mustard	cytosol	26.41	25.69
Bra039312.1-P	Field mustard	cytosol	26.01	24.95
Bra000965.1-P	Field mustard	cytosol	25.81	24.95
Bra006091.1-P	Field mustard	cytosol	25.4	24.05
Bra016037.1-P	Field mustard	cytosol	28.43	19.39
Bra023712.1-P	Field mustard	plastid	17.34	17.99

Protein Annotations

MapMan:16.11.3.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra040687	EnsemblPlants:Bra040687.1	EnsemblPlants:Bra040687.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4FHV8	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF331	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002545455
SEG:seg	:	:	:	:	:

Description

AT3G53110 (E=8e-236) LOS4 | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4); ATP-dependent helicase/ RNA helicase/ RNA-dependent ATPase

Coordinates

chrA04:-:3985032..3987563

Molecular Weight (calculated)

55493.2 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.448

Length

496 amino acids

Sequence
(BLAST)

001: MSDTVEKVPT AEASSSSVEA SITGENTEPT TTTEKTKWGD VEDDDEEESD AVSELKYLSI KDEEKPESIL DEPEDSNIKA VTSGDTPYTS ASRFEDLNLS
101: PELMKGLYVE MKFEKPSKIQ AISLPMIITP PHKHLIAQAH NGSGKTTCFV LGMLSRVDPS LRQPQALCIC PTRELANQNM EVLQKMGKFT GITAEVAVPE
201: SNQGVTTARR APVSAQVVIG TPGTLKKWMA FKKLGLNHLK ILVFDEADHM LATDGFRDDS LRIMKDIERV NPNYQVLLFS ATFNETVKDF VQRTVKSPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQDKIEVI KDQIMELGDI GQTIIFVKTK VSASKVHKAL AEMGYDVTSV HGSMSQEDRD KIVKEFKDCL TQVLIATDVL
401: ARGFDQQRVN LVVNYNMPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLENGNDKEV MEKIERYFGA QVKEIKSWNS EEEYKGALKE AGLLDE

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.