Factsheet for Bra037977.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24057	Canola	cytosol	99.27	99.27
CDY33073	Canola	cytosol	98.79	98.79
Bra030893.1-P	Field mustard	cytosol	93.69	93.69
Bra014365.1-P	Field mustard	cytosol	93.2	93.2
AT1G54270.1	Thale cress	cytosol	92.48	92.48
Bra001530.1-P	Field mustard	cytosol	92.23	91.35
Bra021517.1-P	Field mustard	cytosol	91.26	91.26
Bra027387.1-P	Field mustard	cytosol	91.02	91.02
Bra029124.1-P	Field mustard	cytosol	90.29	90.73
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	86.41	90.36
PGSC0003DMT400021166	Potato	cytosol	90.29	90.07
Solyc08g062800.2.1	Tomato	extracellular, plastid	90.29	90.07
PGSC0003DMT400075339	Potato	cytosol	90.29	90.07
Solyc12g095990.1.1	Tomato	nucleus	90.05	89.83
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	89.81	89.59
PGSC0003DMT400075336	Potato	cytosol	89.08	89.51
KRH52210	Soybean	cytosol, endoplasmic reticulum	89.32	89.1
Bra030892.1-P	Field mustard	cytosol	14.32	86.76
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	88.59	85.48
Bra022449.1-P	Field mustard	cytosol	58.74	59.31
Bra038231.1-P	Field mustard	cytosol	58.74	59.31
Bra032127.1-P	Field mustard	cytosol	58.74	59.31
Bra014267.1-P	Field mustard	cytosol	52.67	53.71
TraesCS6B01G217800.1	Wheat	cytosol	53.16	52.02
Bra016037.1-P	Field mustard	cytosol	88.35	50.07
GSMUA_Achr9P13950_001	Banana	mitochondrion	34.95	46.91
TraesCS6A01G186600.1	Wheat	cytosol	54.37	40.73
Bra008527.1-P	Field mustard	cytosol	30.83	38.48
Bra023311.1-P	Field mustard	cytosol	35.68	34.43
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	52.91	34.06
Bra023312.1-P	Field mustard	cytosol	35.68	33.72
Bra008984.1-P	Field mustard	cytosol	33.5	32.39
Bra007587.1-P	Field mustard	cytosol	35.92	31.29
Bra003442.1-P	Field mustard	cytosol	36.16	31.24
Bra037351.1-P	Field mustard	cytosol	36.65	29.61
Bra008983.1-P	Field mustard	cytosol	33.74	29.45
Bra000965.1-P	Field mustard	cytosol	35.92	28.85
Bra039312.1-P	Field mustard	cytosol	35.68	28.43
OQU84655	Sorghum	cytosol	51.46	27.71
Bra028547.1-P	Field mustard	cytosol	32.77	27.49
Bra040687.1-P	Field mustard	cytosol	32.77	27.22
Bra006091.1-P	Field mustard	cytosol	33.98	26.72
Os02t0221300-01	Rice	cytosol	53.64	25.09
Zm00001d016350_P001	Maize	vacuole	28.64	23.41
Bra023712.1-P	Field mustard	plastid	25.49	21.97
Zm00001d016351_P002	Maize	nucleus	47.09	21.75
KXG29825	Sorghum	cytosol	46.36	21.66
TraesCS6A01G186800.1	Wheat	cytosol	55.58	17.97
TraesCS6D01G173700.3	Wheat	cytosol	55.83	17.11
TraesCS6B01G217700.1	Wheat	cytosol	54.61	16.85

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra037977	EnsemblPlants:Bra037977.1	EnsemblPlants:Bra037977.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4FA63	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF551	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000253E6FF	:

Description

AT3G13920 (E=3e-222) EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor

Coordinates

chrA06:-:323776..325442

Molecular Weight (calculated)

46655.1 Da

IEP (calculated)

5.210

GRAVY (calculated)

-0.246

Length

412 amino acids

Sequence
(BLAST)

001: MAGSAPEGTQ FNTRQFDQKL NEVLEGQNEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCNGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDITLVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHT CVGGTSVVED QRILQAGVHV VVGTPGRVFD MLRRQSLRSD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT KKFMSKPVRI LVKRDELTLE GIRQFYVNVE KEEYKLETLC DLYDTLNITQ GVIFVNTRRK VDWLTDQMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGTAIN FVTRDDERML SDIQKFYNVA
401: VEELPSKVDD LI

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.