Factsheet for Bra016037.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra020407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72730.1	Bra020407.1-P	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.4	96.02
AT1G72730.1	Thale cress	cytosol	54.2	95.17
Bra030893.1-P	Field mustard	cytosol	51.72	91.26
Bra014365.1-P	Field mustard	cytosol	51.44	90.78
Bra021517.1-P	Field mustard	cytosol	51.17	90.29
Bra001530.1-P	Field mustard	cytosol	51.58	90.14
Bra027387.1-P	Field mustard	cytosol	51.03	90.05
Bra030892.1-P	Field mustard	cytosol	8.39	89.71
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	50.89	89.59
KRH52210	Soybean	cytosol, endoplasmic reticulum	50.48	88.86
Bra037977.1-P	Field mustard	cytosol	50.07	88.35
Bra029124.1-P	Field mustard	cytosol	49.79	88.29
Solyc07g040750.1.1	Tomato	cytosol	49.24	86.68
Bra022449.1-P	Field mustard	cytosol	33.56	59.8
Bra032127.1-P	Field mustard	cytosol	33.56	59.8
Bra038231.1-P	Field mustard	cytosol	33.42	59.56
Bra014267.1-P	Field mustard	cytosol	30.26	54.46
TraesCS6B01G217800.1	Wheat	cytosol	30.4	52.49
GSMUA_Achr9P13950_001	Banana	mitochondrion	20.77	49.19
TraesCS6A01G186600.1	Wheat	cytosol	31.36	41.45
Bra008527.1-P	Field mustard	cytosol	17.06	37.58
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	30.81	35.0
Bra023311.1-P	Field mustard	cytosol	19.81	33.72
Bra023312.1-P	Field mustard	cytosol	19.67	32.8
Bra007587.1-P	Field mustard	cytosol	20.77	31.92
Bra003442.1-P	Field mustard	cytosol	20.77	31.66
Bra008984.1-P	Field mustard	cytosol	18.43	31.46
Bra037351.1-P	Field mustard	cytosol	20.63	29.41
Bra039312.1-P	Field mustard	cytosol	20.5	28.82
Bra008983.1-P	Field mustard	cytosol	18.71	28.81
OQU84655	Sorghum	cytosol	30.26	28.76
Bra000965.1-P	Field mustard	cytosol	20.22	28.66
Bra040687.1-P	Field mustard	cytosol	19.39	28.43
Bra028547.1-P	Field mustard	cytosol	18.84	27.9
Os02t0221300-01	Rice	cytosol	33.15	27.36
Bra006091.1-P	Field mustard	cytosol	18.84	26.14
Zm00001d016350_P001	Maize	vacuole	17.33	25.0
Zm00001d016351_P002	Maize	nucleus	28.2	22.98
KXG29825	Sorghum	cytosol	26.96	22.22
Bra023712.1-P	Field mustard	plastid	14.58	22.18
TraesCS6A01G186800.1	Wheat	cytosol	33.7	19.23
TraesCS6D01G173700.3	Wheat	cytosol	33.84	18.3
TraesCS6B01G217700.1	Wheat	cytosol	33.15	18.05

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:17.4.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra016037
EnsemblPlants:Bra016037.1	EnsemblPlants:Bra016037.1-P	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:Histone_H1/H5_H15	InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR005818	InterPro:IPR014001	InterPro:IPR014014
InterPro:IPR017930	InterPro:IPR036388	UniProt:M4DHR0	InterPro:Myb_dom	InterPro:P-loop_NTPase	PFAM:PF00249
PFAM:PF00270	PFAM:PF00271	PFAM:PF00538	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PFscan:PS51294	PFscan:PS51504	PANTHER:PTHR24031	PANTHER:PTHR24031:SF551	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	InterPro:SANT/Myb	SMART:SM00487	SMART:SM00490	SMART:SM00526	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF46785	SUPFAM:SSF52540	UniParc:UPI0002541C4C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT1G72730 (E=6e-228) | eukaryotic translation initiation factor 4A, putative / eIF-4A, putative

Coordinates

chrA07:-:19730438..19734340

Molecular Weight (calculated)

81512.4 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.394

Length

727 amino acids

Sequence
(BLAST)

001: MGNQKLKWTG DEEEALRAGI EKHGPGKWKN ILRDPEFAHQ LTNRSNIDLK DKWRNLCVAP GTQCSNDKSR TRKVKEEGVT LASLSPTAAT ATPPSYPNSS
101: SSSPATSLPR SASSDFSVDN NFAVDNKNAP RYDAMIFEAI SELADPNGSD VGSIFSFIEP RHEVPPTFRR VLSSRLRRLA AQGKLSKVSN SKPLLNFYKL
201: PDGSETTTRT TPAPTPKPKE TNVKPRQSYI NQPPSVSQEM IDEAAITAAC KVVEAENKIN VAKAAVEELE KTTKLADETE LMLELSWRGC GLGLSLWGLY
301: RRAQQCVYIH PLVMAGMASE GTQYDPRQFD TKMNAILGEE GQETFYTTYD EVCDSFDTME LRSDLLRGIY AYGFEKPSAI QQRGIIPFCK GLDVIQQAQS
401: GTGKTATFCS GVLQQLDYTL LQCQALVLAP TRELAQQIEK VMRALGDYLG VKVHACVGGT SVREDQRILQ YGVHVVVGTP GRVFDMLRRQ SLRADAIKMF
501: VLDEADEMLS RGFKDQIYDI FQLLPSKVQV GVFSATMPPE ALEITRKFMS KPVRILVKRD ELTLEGIKQF YVNVDKEEWK LETLCDLYET LAITQSVIFV
601: NTRRKVDWLT DKMRSRDHTV SATHGDMDQN TRDIIMREFR SGSSRVLITT DLLARGIDVQ QVSLVINFDL PTQPENYLHR IGRSGRFGRK GVAINFMTTD
701: DERMMSDIQK FYNVVVEELP NNVADLL

Best Arabidopsis Sequence Match ( AT1G72730.1 )
(BLAST)

001: MAGMASDGTQ YDPRQFDTKM NAILGEEGEE TFYTNYDEVC DSFDAMELQP DLLRGIYAYG FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL

Arabidopsis Description

TIF4A-3Eukaryotic initiation factor 4A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.