Factsheet for Bra008984.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023311.1-P	Field mustard	cytosol	91.08	90.87
AT5G11170.1	Thale cress	cytosol	90.38	90.16
Bra023312.1-P	Field mustard	cytosol	92.02	89.91
PGSC0003DMT400053566	Potato	cytosol	87.09	86.89
PGSC0003DMT400052757	Potato	cytosol	86.62	86.22
VIT_09s0002g06660.t01	Wine grape	cytosol	85.21	84.81
Solyc06g066060.2.1	Tomato	nucleus	81.46	84.63
CDX69778	Canola	cytosol	97.42	83.84
KRH44441	Soybean	cytosol, nucleus	83.57	83.57
KRH47464	Soybean	nucleus	83.57	83.57
Bra008983.1-P	Field mustard	cytosol	92.02	83.05
KXG22711	Sorghum	cytosol	83.33	82.75
KXG32708	Sorghum	cytosol	83.1	82.71
TraesCS3B01G224400.1	Wheat	cytosol	82.63	82.24
TraesCS1B01G477500.1	Wheat	cytosol	83.1	82.13
TraesCS3D01G204400.1	Wheat	cytosol	82.39	82.01
TraesCS1A01G443400.1	Wheat	cytosol	83.1	81.57
TraesCS1D01G451300.1	Wheat	cytosol	80.75	81.32
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	81.92	80.79
Os01t0549700-01	Rice	cytosol, plastid	81.69	80.56
TraesCS3A01G200100.1	Wheat	cytosol	81.92	80.05
VIT_04s0008g05330.t01	Wine grape	cytosol	85.68	79.87
GSMUA_Achr8P05380_001	Banana	cytosol	86.62	79.7
AT5G11200.2	Thale cress	cytosol	90.38	79.22
CDY71952	Canola	cytosol	77.23	78.9
Solyc08g061000.2.1	Tomato	nucleus	86.85	76.29
HORVU1Hr1G095100.5	Barley	cytosol	81.46	73.99
Zm00001d009761_P004	Maize	cytosol	83.57	72.8
Bra006091.1-P	Field mustard	cytosol	84.98	69.08
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	77.23	66.06
Zm00001d011149_P002	Maize	cytosol	25.35	65.06
Zm00001d011150_P005	Maize	cytosol	61.74	56.8
Bra030892.1-P	Field mustard	cytosol	7.04	44.12
Bra027387.1-P	Field mustard	cytosol	32.63	33.74
Bra014365.1-P	Field mustard	cytosol	32.39	33.5
Bra021517.1-P	Field mustard	cytosol	32.39	33.5
Bra037977.1-P	Field mustard	cytosol	32.39	33.5
Bra030893.1-P	Field mustard	cytosol	32.16	33.25
Bra001530.1-P	Field mustard	cytosol	32.39	33.17
Bra029124.1-P	Field mustard	cytosol	31.92	33.17
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.92	31.85
Bra008527.1-P	Field mustard	cytosol	24.65	31.82
Bra032127.1-P	Field mustard	cytosol	30.28	31.62
Bra022449.1-P	Field mustard	cytosol	30.05	31.37
Bra038231.1-P	Field mustard	cytosol	30.05	31.37
Bra014267.1-P	Field mustard	cytosol	28.64	30.2
Bra003442.1-P	Field mustard	cytosol	32.39	28.93
Bra007587.1-P	Field mustard	cytosol	31.92	28.75
Bra037351.1-P	Field mustard	cytosol	32.86	27.45
Bra000965.1-P	Field mustard	cytosol	32.39	26.9
Bra039312.1-P	Field mustard	cytosol	32.16	26.5
Bra040687.1-P	Field mustard	cytosol	29.81	25.6
Bra028547.1-P	Field mustard	cytosol	29.34	25.46
Bra016037.1-P	Field mustard	cytosol	31.46	18.43
Bra023712.1-P	Field mustard	plastid	20.66	18.41

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra008984	EnsemblPlants:Bra008984.1	EnsemblPlants:Bra008984.1-P
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:M4CXN7	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0002544301	SEG:seg	:	:	:

Description

AT5G11200 (E=5e-102) | DEAD/DEAH box helicase, putative

Coordinates

chrA10:+:14724754..14727509

Molecular Weight (calculated)

48198.1 Da

IEP (calculated)

6.034

GRAVY (calculated)

-0.215

Length

426 amino acids

Sequence
(BLAST)

001: MGDVRESEAY EEELLDYEEE DEKLLDSATK TNGDAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EGKFISLLSL FLSLHLDFFL QHECIPQAIL
101: GMDVICQAKS GMGKTAVFVL STLQQIEPSP GQVSALILCH TRELAYQICN EFVRFSTYLP DTRVSVFYGG VNNKIHKELL KNEYPHIVVG TPGRGLGLAR
201: GKDLSLKNAR HFILDECDKM LESLDMRRDV QEIFKMTPHD KQVMMFSATL SKEIRPVCKK FMQDHYIKLS EMEKNRKLND LLDALDFNQV VIFVKSVSRA
301: GELNKLLIEC NFPSICIHSG MSQEERLTHY KSFKEGHKRI LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VASASDSEVL
401: NQVQARFEVD IKELPEQIDT STYMPS

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.