Factsheet for HORVU1Hr1G095100.5

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G477500.1	Wheat	cytosol	88.06	95.82
TraesCS1A01G443400.1	Wheat	cytosol	88.06	95.16
TraesCS1D01G451300.1	Wheat	cytosol	85.5	94.8
KXG22711	Sorghum	cytosol	85.93	93.94
VIT_09s0002g06660.t01	Wine grape	cytosol	82.09	89.95
PGSC0003DMT400053566	Potato	cytosol	81.88	89.93
Solyc06g066060.2.1	Tomato	nucleus	77.4	88.54
AT5G11170.1	Thale cress	cytosol	80.38	88.29
PGSC0003DMT400052757	Potato	cytosol	80.38	88.08
KRH61783	Soybean	cytosol	79.53	87.35
KRH52452	Soybean	nucleus	79.32	87.12
KRH47464	Soybean	nucleus	78.89	86.85
Bra023311.1-P	Field mustard	cytosol	78.89	86.65
KRH44441	Soybean	cytosol, nucleus	78.68	86.62
CDX85725	Canola	cytosol	80.17	85.07
Bra023312.1-P	Field mustard	cytosol	78.46	84.4
CDY51112	Canola	cytosol	78.89	84.09
VIT_04s0008g05330.t01	Wine grape	cytosol	81.66	83.81
CDX70383	Canola	cytosol	79.53	83.45
GSMUA_Achr8P05380_001	Banana	cytosol	82.3	83.37
Zm00001d009761_P004	Maize	cytosol	85.93	82.41
Bra008984.1-P	Field mustard	cytosol	73.99	81.46
Solyc08g061000.2.1	Tomato	nucleus	81.88	79.18
AT5G11200.2	Thale cress	cytosol	80.38	77.57
CDY71952	Canola	cytosol	68.66	77.22
Bra008983.1-P	Field mustard	cytosol	75.91	75.42
CDX85726	Canola	cytosol	78.68	75.31
CDX69778	Canola	cytosol	79.32	75.15
CDX78412	Canola	cytosol	79.53	75.05
CDY51111	Canola	cytosol	38.59	72.69
CDX69777	Canola	cytosol, nucleus, plasma membrane	79.32	71.13
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	75.27	70.88
Bra006091.1-P	Field mustard	cytosol	73.13	65.46
CDY56825	Canola	cytosol	27.72	57.02
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	28.57	44.82
HORVU6Hr1G094560.1	Barley	cytosol	28.36	32.28
HORVU3Hr1G015460.1	Barley	cytosol	9.81	30.07
HORVU3Hr1G015500.1	Barley	cytosol	9.81	30.07
HORVU6Hr1G020910.1	Barley	cytosol	31.98	29.7
HORVU6Hr1G060630.1	Barley	cytosol	30.28	27.41
HORVU3Hr1G050890.1	Barley	cytosol	9.17	26.54
HORVU1Hr1G046020.1	Barley	cytosol	30.06	25.0
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	25.37	23.52
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	25.8	18.91
HORVU6Hr1G059910.1	Barley	mitochondrion	23.88	18.64
HORVU3Hr1G114220.3	Barley	plastid	19.4	18.38

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	UniProt:A0A287GU29	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU1Hr1G095100	EnsemblPlants:HORVU1Hr1G095100.5
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B47A9ED
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:557122302..557125632

Molecular Weight (calculated)

52959.9 Da

IEP (calculated)

5.381

GRAVY (calculated)

-0.200

Length

469 amino acids

Sequence
(BLAST)

001: ESRTGENDVY EDELLDYEED DDKVVLEASA AKPAADAKKG YVGIHSSGFR DFLLKPELLR AIQDCGFEHP SEVQHECIPQ AILGMDVICQ AKSGMGKTAV
101: FVLSSLQQID PTAGQVAALV LCHTRELAYQ ICSEFERFSR FLPELKVAVF YGGVHIKKHK DLLKNDCPHI VVGTPGRILA LARDKDLSLK NVRHFILDEC
201: DKMLESLDMR RDVQEIFKMT PHDKQVMMFS ATLSKEIRPI CKKFMQDPME IYVDDEAKLT LHGLVQHYIK LTESEKNRKL NDLLDALDFN QVVIFVKSVS
301: RAAELNKLLC ECNFPSICIH SGMTQEERLT RYKNFKEGHK RILVATDLVG RGIDIERVNI VINYDMPDSA DTYLHRVGRA GRFGTKGLAI TFVSSASDSD
401: VLNQVQERFE VDIKELPEQI DTSTYSNAVV DDHPRTLQGG RKEKMEDGVL ECLVEVMVVF FACLPALLL

Best Arabidopsis Sequence Match ( AT5G11200.1 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.