Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- endoplasmic reticulum 4
- extracellular 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053566 | Potato | cytosol | 87.63 | 99.53 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 83.71 | 94.86 |
| Solyc06g066060.2.1 | Tomato | nucleus | 79.38 | 93.9 |
| AT5G11170.1 | Thale cress | cytosol | 82.47 | 93.68 |
| KXG22711 | Sorghum | cytosol | 82.27 | 93.01 |
| KRH47464 | Soybean | nucleus | 81.44 | 92.72 |
| KRH44441 | Soybean | cytosol, nucleus | 81.44 | 92.72 |
| Bra023311.1-P | Field mustard | cytosol | 80.0 | 90.87 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 80.62 | 90.72 |
| KXG32708 | Sorghum | cytosol | 79.79 | 90.42 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 80.82 | 90.32 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 78.56 | 90.07 |
| Bra023312.1-P | Field mustard | cytosol | 80.41 | 89.45 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 78.35 | 88.78 |
| Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 78.97 | 88.66 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 83.51 | 88.62 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 78.14 | 88.55 |
| CDX85725 | Canola | cytosol | 80.62 | 88.46 |
| Os01t0549700-01 | Rice | cytosol, plastid | 78.76 | 88.43 |
| CDY51112 | Canola | cytosol | 80.21 | 88.41 |
| CDX70383 | Canola | cytosol | 81.24 | 88.14 |
| Bra008984.1-P | Field mustard | cytosol | 76.29 | 86.85 |
| GSMUA_Achr8P05380_001 | Banana | cytosol | 82.68 | 86.61 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 77.73 | 86.47 |
| AT5G11200.2 | Thale cress | cytosol | 82.47 | 82.3 |
| HORVU1Hr1G095100.5 | Barley | cytosol | 79.18 | 81.88 |
| Zm00001d009761_P004 | Maize | cytosol | 81.44 | 80.78 |
| CDY71952 | Canola | cytosol | 68.87 | 80.1 |
| CDX78412 | Canola | cytosol | 81.24 | 79.28 |
| CDX69778 | Canola | cytosol | 80.82 | 79.19 |
| CDX85726 | Canola | cytosol | 80.0 | 79.18 |
| Bra008983.1-P | Field mustard | cytosol | 76.49 | 78.6 |
| CDY51111 | Canola | cytosol | 39.18 | 76.31 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 80.82 | 74.95 |
| GSMUA_Achr3P26010_001 | Banana | endoplasmic reticulum | 74.43 | 72.49 |
| Bra006091.1-P | Field mustard | cytosol | 74.64 | 69.08 |
| Zm00001d011149_P002 | Maize | cytosol | 23.09 | 67.47 |
| Zm00001d011150_P005 | Maize | cytosol | 60.62 | 63.5 |
| CDY56825 | Canola | cytosol | 27.22 | 57.89 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.22 | 44.15 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 29.9 | 36.8 |
| Solyc06g062800.2.1 | Tomato | cytosol, nucleus, unclear | 30.31 | 35.59 |
| Solyc12g095990.1.1 | Tomato | nucleus | 30.1 | 35.35 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 30.1 | 35.35 |
| Solyc07g040750.1.1 | Tomato | cytosol | 29.9 | 35.11 |
| Solyc11g033280.1.1 | Tomato | cytosol, nucleus, plastid | 27.42 | 34.02 |
| Solyc10g017530.2.1 | Tomato | nucleus | 30.1 | 29.74 |
| Solyc01g094350.2.1 | Tomato | nucleus | 30.1 | 29.32 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 29.69 | 26.82 |
| Solyc04g082790.2.1 | Tomato | plastid | 25.36 | 24.65 |
| Solyc10g085790.1.1 | Tomato | nucleus | 25.15 | 24.02 |
| Solyc08g080550.1.1 | Tomato | nucleus | 21.65 | 19.16 |
| Solyc01g079800.2.1 | Tomato | plastid | 17.73 | 18.74 |
Protein Annotations
| MapMan:16.11.1.3 | MapMan:16.4.7.1.1 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006406 | GO:GO:0006810 | GO:GO:0006950 |
| GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010501 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| UniProt:K4CKP3 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF530 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc08g061000.2 | EnsemblPlants:Solyc08g061000.2.1 | UniParc:UPI000276CA7F | SEG:seg | : |
Description
No Description!
Coordinates
chr8:-:46338875..46345181
Molecular Weight (calculated)
55036.6 Da
IEP (calculated)
5.373
GRAVY (calculated)
-0.152
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MITPILFIEI ILSSIIYPSH HKTLSPFALI RFLYFPNIFS AASETLIPPS EILQVELNMG ENKENDAYEE ELLDYEEDDE KIPDSTTKVN GESSKKGYVG
101: IHSSGFRDFL LKPELLRAIV DSGFEHPSEV QHECIPQAIL GMDVICQAKS GMGKTAVFVL STLQQIEPVA GQVAALVLCH TRELAYQICH EFERFSTYLP
201: DIKVAVFYGG VNIKLHKELL KNECPHIVVG TPGRILALAR DKDLSLRNVR HFILDECDKM LESLDMRRDV QEIFKMTPHD KQVMMFSATL SKEIRPVCKK
301: FMQDPMEIYV DDEAKLTLHG LVQHYIKLSE TEKNRKLNDL LDALDFNQVV IFVKSVSRAA ELNKLLMECN FPSICIHSGM SQEERLTRYK GFKEGHKRIL
401: VATDLVGRGI DIERVNIVIN YDMPDSADTY LHRVGRAGRF GTKGLAITFV SSASDSEVLN QVQERFEVDI KELPEQIDTS TYMPS
101: IHSSGFRDFL LKPELLRAIV DSGFEHPSEV QHECIPQAIL GMDVICQAKS GMGKTAVFVL STLQQIEPVA GQVAALVLCH TRELAYQICH EFERFSTYLP
201: DIKVAVFYGG VNIKLHKELL KNECPHIVVG TPGRILALAR DKDLSLRNVR HFILDECDKM LESLDMRRDV QEIFKMTPHD KQVMMFSATL SKEIRPVCKK
301: FMQDPMEIYV DDEAKLTLHG LVQHYIKLSE TEKNRKLNDL LDALDFNQVV IFVKSVSRAA ELNKLLMECN FPSICIHSGM SQEERLTRYK GFKEGHKRIL
401: VATDLVGRGI DIERVNIVIN YDMPDSADTY LHRVGRAGRF GTKGLAITFV SSASDSEVLN QVQERFEVDI KELPEQIDTS TYMPS
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
Arabidopsis Description
DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.