Factsheet for Zm00001d009761_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22711	Sorghum	cytosol	86.91	99.07
TraesCS1B01G477500.1	Wheat	cytosol	83.23	94.43
TraesCS1A01G443400.1	Wheat	cytosol	83.03	93.55
TraesCS1D01G451300.1	Wheat	cytosol	80.78	93.38
PGSC0003DMT400053566	Potato	cytosol	80.78	92.51
VIT_09s0002g06660.t01	Wine grape	cytosol	80.78	92.29
PGSC0003DMT400052757	Potato	cytosol	79.35	90.65
Solyc06g066060.2.1	Tomato	nucleus	75.26	89.76
AT5G11170.1	Thale cress	cytosol	78.32	89.7
KRH61783	Soybean	cytosol	77.71	88.99
KRH52452	Soybean	nucleus	77.51	88.76
KRH44441	Soybean	cytosol, nucleus	77.1	88.5
KRH47464	Soybean	nucleus	77.1	88.5
Bra023311.1-P	Field mustard	cytosol	75.87	86.89
VIT_04s0008g05330.t01	Wine grape	cytosol	80.37	86.0
HORVU1Hr1G095100.5	Barley	cytosol	82.41	85.93
GSMUA_Achr8P05380_001	Banana	cytosol	81.19	85.75
Bra023312.1-P	Field mustard	cytosol	76.07	85.32
CDX85725	Canola	cytosol	77.1	85.29
CDY51112	Canola	cytosol	76.69	85.23
CDX70383	Canola	cytosol	77.3	84.56
Bra008984.1-P	Field mustard	cytosol	72.8	83.57
Solyc08g061000.2.1	Tomato	nucleus	80.78	81.44
AT5G11200.2	Thale cress	cytosol	79.14	79.63
CDY71952	Canola	cytosol	66.87	78.42
CDX69778	Canola	cytosol	78.94	77.98
CDX85726	Canola	cytosol	78.12	77.96
CDX78412	Canola	cytosol	78.32	77.06
Bra008983.1-P	Field mustard	cytosol	73.01	75.64
CDY51111	Canola	cytosol	38.04	74.7
CDX69777	Canola	cytosol, nucleus, plasma membrane	79.35	74.19
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	73.21	71.89
Zm00001d011149_P002	Maize	cytosol	22.9	67.47
Zm00001d011150_P005	Maize	cytosol	63.39	66.95
Bra006091.1-P	Field mustard	cytosol	70.76	66.03
CDY56825	Canola	cytosol	26.79	57.46
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	26.99	44.15
Zm00001d036480_P001	Maize	plasma membrane, plastid	31.08	36.72
Zm00001d014673_P001	Maize	plastid	31.08	36.72
Zm00001d015251_P001	Maize	extracellular	30.47	36.34
Zm00001d051840_P003	Maize	extracellular, mitochondrion	28.02	33.66
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	22.7	32.65
Zm00001d018542_P006	Maize	cytosol	28.02	30.93
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	29.65	28.83
Zm00001d051268_P004	Maize	extracellular	29.86	27.97
Zm00001d017384_P008	Maize	cytosol	29.86	27.81
Zm00001d027728_P001	Maize	extracellular, plasma membrane	24.95	24.21
Zm00001d011790_P001	Maize	plastid	19.43	21.25
Zm00001d017345_P002	Maize	plastid	21.68	16.69
Zm00001d016350_P001	Maize	vacuole	14.93	14.48
Zm00001d016351_P002	Maize	nucleus	22.7	12.44

Protein Annotations

EntrezGene:100273717	MapMan:16.11.1.3	Gene3D:3.40.50.300	UniProt:A0A1D6FLR3	ProteinID:AQK92628.1	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000843AE8C	EnsemblPlantsGene:Zm00001d009761	EnsemblPlants:Zm00001d009761_P004	EnsemblPlants:Zm00001d009761_T004
SEG:seg	:	:	:	:	:

Description

Spliceosome RNA helicase BAT1 isoform 1%3B Spliceosome RNA helicase BAT1 isoform 2%3B Spliceosome RNA helicase BAT1 isoform 3

Coordinates

chr8:+:80078127..80082469

Molecular Weight (calculated)

55411.2 Da

IEP (calculated)

6.307

GRAVY (calculated)

-0.129

Length

489 amino acids

Sequence
(BLAST)

001: MMGEAKENDV YEEELLDYEE DDDKTVDGSA AKPTGEVAKK GYVGIHSSGF RDFLLKPELL RAIQDCGFEH PSEGKLLFIY CCQLTSVFPS VKTARYTFFF
101: GAEHVQHECI PQAILGMDVI CQAKSGMGKT AVFVLSSLQQ IDPVAGQVAA LVLCHTRELA YQICHEFERF SKYLTEVKVA VFYGGVHIRK HKDLLKNECP
201: HIVVGTPGRI LALARDKDLS LKNVRHFILD ECDKMLESLD MRRDVQEIFK MTPHDKQVMM FSATLSKEIR PVCKKFMQDV MPCSLLQLSF PKSSYFIPIA
301: PVPMEIYVDD EAKLTLHGLV QHYIKLSEAE KNRKLNDLLD ALDFNQVVIF VKSVSRAAEL NKLLCECNFP SICIHSGMTQ EERLTRYKNF KEGHKRILVA
401: TDLVGRGIDI ERVNIVINYD MPDSADTYLH RVGRAGRFGT KGLAITFVSS ASDSDVLNQV QERFEVDIKE LPEQIDTSTY SKWSLLILL

Best Arabidopsis Sequence Match ( AT5G11200.2 )
(BLAST)

001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDFLEN ETVSVRLFSF GVENSEWRLC SFGFIVLVWV SMFRAILMFH SKTHIFEEKR
301: WTRISPMEIY VDDEAKLTLH GLVQHYIKLS EMEKNRKLND LLDALDFNQV VIFVKSVSRA AELNKLLVEC NFPSICIHSG MSQEERLTRY KSFKEGHKRI
401: LVATDLVGRG IDIERVNIVI NYDMPDSADT YLHRVGRAGR FGTKGLAITF VASASDSEVL NQVQERFEVD IKELPEQIDT STYMPS

Arabidopsis Description

DEAD/DEAH box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JWF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.