Factsheet for Zm00001d015251_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036480_P001	Maize	plasma membrane, plastid	96.83	95.89
Zm00001d014673_P001	Maize	plastid	96.34	95.41
Os02t0146600-01	Rice	plastid	96.1	95.17
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	95.37	94.67
VIT_11s0016g01920.t01	Wine grape	cytosol	94.63	93.95
KRH12430	Soybean	cytosol	93.66	92.98
GSMUA_Achr8P24670_001	Banana	cytosol	85.12	92.82
KRH10048	Soybean	cytosol, endoplasmic reticulum	93.17	92.49
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	93.17	92.49
KRH23270	Soybean	cytosol	93.17	92.49
KRH37426	Soybean	cytosol, endoplasmic reticulum	93.17	92.49
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	92.93	92.25
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	92.93	92.25
KRH47074	Soybean	nucleus	92.93	92.25
GSMUA_Achr10P...	Banana	cytosol	85.85	91.91
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	91.71	91.04
KRH44102	Soybean	nucleus	93.17	90.74
PGSC0003DMT400012518	Potato	cytosol	91.22	90.56
GSMUA_Achr7P19690_001	Banana	cytosol	77.8	90.37
VIT_09s0002g01760.t01	Wine grape	cytosol	93.17	87.61
Zm00001d051840_P003	Maize	extracellular, mitochondrion	62.68	63.15
Zm00001d018542_P006	Maize	cytosol	62.2	57.56
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	29.02	35.0
Zm00001d009761_P004	Maize	cytosol	36.34	30.47
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	36.59	29.82
Zm00001d017384_P008	Maize	cytosol	37.07	28.95
Zm00001d051268_P004	Maize	extracellular	36.83	28.93
Zm00001d011149_P002	Maize	cytosol	10.98	27.11
Zm00001d027728_P001	Maize	extracellular, plasma membrane	32.2	26.19
Zm00001d016350_P001	Maize	vacuole	29.51	24.01
Zm00001d016351_P002	Maize	nucleus	50.0	22.98
Zm00001d011150_P005	Maize	cytosol	25.85	22.89
Zm00001d011790_P001	Maize	plastid	24.15	22.15
Zm00001d017345_P002	Maize	plastid	26.34	17.01

Protein Annotations

EntrezGene:100284697	MapMan:17.4.2.1	Gene3D:3.40.50.300	ProteinID:AQK68495.1	UniProt:B4FBK3	EMBL:BT034491
InterPro:DEAD/DEAH_box_helicase_dom	EMBL:EU969362	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00017B6906	EnsemblPlantsGene:Zm00001d015251	EnsemblPlants:Zm00001d015251_P001	EnsemblPlants:Zm00001d015251_T001

Description

Eukaryotic initiation factor 4A-2

Coordinates

chr5:+:81360857..81365974

Molecular Weight (calculated)

46585.1 Da

IEP (calculated)

5.219

GRAVY (calculated)

-0.242

Length

410 amino acids

Sequence
(BLAST)

001: MAGLAPEGSQ FDDKQYDKKM QEILTEDFFT SYDDVCESFD SMGLQENLLR GIYAYGFEKP SAIQQRGIVP FCKGLDVIQQ AQSGTGKTAT FCSGILQQLD
101: YGLVECQALV LAPTRELAQQ IEKVMRALGD YLGVKVHACV GGTSVREDQR ILASGVHVVV GTPGRVFDML RRQSLRPDNI KMFVLDEADE MLSRGFKDQI
201: YDIFQLLPSK IQVGVFSATM PPEALEITRK FMNKPVRILV KRDELTLEGI KQFYVNIDKE DWKLDTLCDL YETLAITQSV IFVNTRRKVD WLTDKMRSRD
301: HTVSATHGDM DQNTRDIIMR EFRSGSSRVL ITTDLLARGI DVQQVSLVIN YDLPTQPENY LHRIGRSGRF GRKGVAINFV TRDDERMLFD IQRFYNVTVE
401: ELPANVADLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.