Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH47074 | Soybean | nucleus | 97.62 | 99.52 |
| KRH23270 | Soybean | cytosol | 95.49 | 97.34 |
| KRH10048 | Soybean | cytosol, endoplasmic reticulum | 95.49 | 97.34 |
| VIT_11s0016g01920.t01 | Wine grape | cytosol | 92.87 | 94.67 |
| KRH02682 | Soybean | cytosol, endoplasmic reticulum, nucleus | 92.16 | 93.95 |
| KRH19215 | Soybean | cytosol, endoplasmic reticulum, nucleus | 91.92 | 93.7 |
| GSMUA_Achr8P24670_001 | Banana | cytosol | 83.61 | 93.62 |
| GSMUA_Achr2P19480_001 | Banana | cytosol | 82.19 | 93.51 |
| KRH12430 | Soybean | cytosol | 91.69 | 93.46 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 91.45 | 93.22 |
| Solyc06g062800.2.1 | Tomato | cytosol, nucleus, unclear | 91.45 | 93.22 |
| KRH37426 | Soybean | cytosol, endoplasmic reticulum | 91.45 | 93.22 |
| Zm00001d015251_P001 | Maize | extracellular | 90.74 | 93.17 |
| EES04512 | Sorghum | cytosol | 90.74 | 93.17 |
| Zm00001d036480_P001 | Maize | plasma membrane, plastid | 91.45 | 93.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 81.71 | 92.97 |
| Zm00001d014673_P001 | Maize | plastid | 91.21 | 92.75 |
| PGSC0003DMT400012518 | Potato | cytosol | 90.97 | 92.74 |
| TraesCS6B01G144100.1 | Wheat | cytosol | 42.04 | 92.67 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 90.74 | 92.49 |
| GSMUA_Achr6P01750_001 | Banana | cytosol, plasma membrane | 90.74 | 92.49 |
| Os02t0146600-01 | Rice | plastid | 90.5 | 92.03 |
| TraesCS7D01G412200.1 | Wheat | golgi, nucleus | 90.5 | 92.03 |
| TraesCS7A01G419400.1 | Wheat | cytosol | 90.26 | 91.79 |
| TraesCS7B01G320000.1 | Wheat | cytosol | 90.26 | 91.79 |
| Os06t0701100-02 | Rice | extracellular, nucleus, plastid | 90.02 | 91.55 |
| GSMUA_Achr10P... | Banana | cytosol | 83.14 | 91.38 |
| GSMUA_Achr7P19690_001 | Banana | cytosol | 75.3 | 89.8 |
| VIT_09s0002g01760.t01 | Wine grape | cytosol | 91.45 | 88.3 |
| TraesCS6D01G105000.1 | Wheat | endoplasmic reticulum, vacuole | 90.97 | 86.65 |
| TraesCS6A01G116200.1 | Wheat | endoplasmic reticulum, vacuole | 90.97 | 86.65 |
| GSMUA_Achr5P06410_001 | Banana | cytosol, mitochondrion | 82.66 | 79.63 |
| HORVU6Hr1G020910.1 | Barley | cytosol | 90.74 | 75.64 |
| OQU76995 | Sorghum | cytosol | 91.21 | 74.27 |
| TraesCS6B01G144000.1 | Wheat | golgi | 90.97 | 69.51 |
| KRH12197 | Soybean | nucleus | 59.38 | 61.58 |
| KRH37217 | Soybean | endoplasmic reticulum | 59.14 | 61.18 |
| KRH47464 | Soybean | nucleus | 35.63 | 35.21 |
| KRH44441 | Soybean | cytosol, nucleus | 35.63 | 35.21 |
| KRH04755 | Soybean | cytosol | 22.09 | 35.09 |
| KRH52452 | Soybean | nucleus | 35.15 | 34.66 |
| KRH61783 | Soybean | cytosol | 35.15 | 34.66 |
| KRH48173 | Soybean | mitochondrion | 35.63 | 30.0 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 35.63 | 29.88 |
| KRH65096 | Soybean | nucleus | 35.39 | 29.86 |
| KRH48170 | Soybean | endoplasmic reticulum | 35.63 | 29.82 |
| KRG99590 | Soybean | endoplasmic reticulum, nucleus | 33.02 | 28.48 |
| KRG93607 | Soybean | nucleus | 32.78 | 27.88 |
| KRH40488 | Soybean | cytosol | 35.63 | 27.83 |
| KRH02098 | Soybean | cytosol | 12.11 | 22.17 |
| KRH51049 | Soybean | plastid | 24.23 | 21.61 |
| KRH13813 | Soybean | nucleus | 26.6 | 19.93 |
| KRH43643 | Soybean | nucleus | 26.6 | 19.93 |
Protein Annotations
| EntrezGene:100817948 | MapMan:17.4.2.1 | Gene3D:3.40.50.300 | EMBL:ACUP02004908 | InterPro:DEAD/DEAH_box_helicase_dom | EnsemblPlantsGene:GLYMA_08G190100 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | UniProt:I1KUR0 | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | EnsemblPlants:KRH44102 | ProteinID:KRH44102 | ProteinID:KRH44102.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF365 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI00023C67D8 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:15271412..15274568
Molecular Weight (calculated)
47552.3 Da
IEP (calculated)
5.091
GRAVY (calculated)
-0.181
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVLLFAVMA GLAPEGTQFD GRQYDAKMSE LLSTDGQEFF TSYDEVYDSF DAMGLQENLL RGIYAYGFER PSAIQQRGIV PFCKGLDVIQ QAQSGTGKTA
101: TFCSGILQQL DYGLVQCQAL VLAPTRELAQ QIEKVMRALG DYLGVKVHAC VGGTSVREDQ RILQAGVHTV VGTPGRVFDM LRRQSLRPDC IKMFVLDEAD
201: EMLSRGFKDQ IYDIFQLLPS KIQVGVFSAT MPPEALEITR KFMNKPVRIL VKRDELTLEG IKQFYVNVDK EEWKLETLCD LYETLAITQS VIFVNTRRKV
301: DWLTDKMRSN DHTVSATHGD MDQNTRDIIM REFRSGSSRV LITTDLLARG IDVQQVSLVI NYDLPTQPEN YLHRIGRSGR FGRKGVAINF VTTDDSRMLS
401: DIQKFYNVTV EELPSNVADL L
101: TFCSGILQQL DYGLVQCQAL VLAPTRELAQ QIEKVMRALG DYLGVKVHAC VGGTSVREDQ RILQAGVHTV VGTPGRVFDM LRRQSLRPDC IKMFVLDEAD
201: EMLSRGFKDQ IYDIFQLLPS KIQVGVFSAT MPPEALEITR KFMNKPVRIL VKRDELTLEG IKQFYVNVDK EEWKLETLCD LYETLAITQS VIFVNTRRKV
301: DWLTDKMRSN DHTVSATHGD MDQNTRDIIM REFRSGSSRV LITTDLLARG IDVQQVSLVI NYDLPTQPEN YLHRIGRSGR FGRKGVAINF VTTDDSRMLS
401: DIQKFYNVTV EELPSNVADL L
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.