CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036480_P001	Maize	plasma membrane, plastid	79.5	99.28
Zm00001d014673_P001	Maize	plastid	79.5	99.28
Os02t0146600-01	Rice	plastid	78.34	97.83
EES04512	Sorghum	cytosol	77.18	97.32
GSMUA_Achr8P24670_001	Banana	cytosol	69.05	94.95
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	75.63	94.67
VIT_11s0016g01920.t01	Wine grape	cytosol	75.44	94.43
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	74.85	93.7
KRH12430	Soybean	cytosol	74.85	93.7
KRH37426	Soybean	cytosol, endoplasmic reticulum	74.85	93.7
KRH10048	Soybean	cytosol, endoplasmic reticulum	74.47	93.22
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	74.47	93.22
KRH23270	Soybean	cytosol	74.47	93.22
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	74.27	92.98
KRH47074	Soybean	nucleus	73.89	92.49
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	73.69	92.25
PGSC0003DMT400012518	Potato	cytosol	73.31	91.77
GSMUA_Achr10P...	Banana	cytosol	67.7	91.38
KRH44102	Soybean	nucleus	74.27	91.21
GSMUA_Achr7P19690_001	Banana	cytosol	61.9	90.65
VIT_09s0002g01760.t01	Wine grape	cytosol	75.24	89.22
EES07819	Sorghum	cytosol	50.29	63.88
KXG22711	Sorghum	cytosol	29.59	35.66
KXG32708	Sorghum	cytosol	28.43	34.35
EER91410	Sorghum	cytosol	29.4	29.98
EER91411	Sorghum	cytosol	29.21	29.78
OQU84655	Sorghum	cytosol	42.94	29.02
EER95473	Sorghum	cytosol	26.31	27.25
KXG29825	Sorghum	cytosol	40.23	23.58
KXG34209	Sorghum	plastid	19.15	22.35
OQU85369	Sorghum	mitochondrion, plastid	21.28	19.2

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	UniProt:A0A1W0VUR3	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:OQU76995
ProteinID:OQU76995	ProteinID:OQU76995.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3010G251100	SUPFAM:SSF52540	UniParc:UPI0009DC8D0C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:59035964..59040060

Molecular Weight (calculated)

57459.0 Da

IEP (calculated)

6.365

GRAVY (calculated)

-0.237

Length

517 amino acids

Sequence
(BLAST)

001: MGPGPESPGT AHGGEKPYPS WGVVVASATR PLHTAGTARL PLKSRLSPPP ANPRFSLSCA APSLSLTSAA ESETPISGSP QRTEHPHRLS PGPIRALISV
101: ASVMAGMAPE GSQFDAKHYD SKMQELLSTG ETEEFFTSYD EVFESFDDMG LQENLLRGIY AYGFEKPSAI QQRGIVPFCK GLDVIQQAQS GTGKTATFCS
201: GILQQLDYGL VECQALVLAP TRELAQQIEK VMRALGDYLG VKVHACVGGT SVREDQRILA SGVHVVVGTP GRVFDMLRRQ SLRPDNIKMF VLDEADEMLS
301: RGFKDQIYDI FQLLPAKIQV GVFSATMPPE ALEITRKFMN KPVRILVKRD ELTLEGIKQF YVNVEKEDWK LDTLCDLYET LAITQSVIFV NTRRKVDWLT
401: DKMRSRDHTV SATHGDMDQN TRDIIMREFR SGSSRVLITT DLLARGIDVQ QVSLVINYDL PTQPENYLHR IGRSGRFGRK GVAINFVTRD DERMLFDIQK
501: FYNVVIEELP ANVADLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.