CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	99.03	99.03
KRH37426	Soybean	cytosol, endoplasmic reticulum	96.37	96.37
KRH12430	Soybean	cytosol	96.37	96.37
GSMUA_Achr8P24670_001	Banana	cytosol	86.2	94.68
KRH23270	Soybean	cytosol	94.19	94.19
KRH10048	Soybean	cytosol, endoplasmic reticulum	94.19	94.19
GSMUA_Achr2P19480_001	Banana	cytosol	84.26	94.05
GSMUA_AchrUn_...	Banana	cytosol	84.26	94.05
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	93.7	93.7
EES04512	Sorghum	cytosol	92.98	93.66
KRH47074	Soybean	nucleus	93.46	93.46
Zm00001d015251_P001	Maize	extracellular	92.49	93.17
Zm00001d036480_P001	Maize	plasma membrane, plastid	93.22	93.0
KRH52210	Soybean	cytosol, endoplasmic reticulum	92.98	92.98
Os02t0146600-01	Rice	plastid	92.98	92.75
Zm00001d014673_P001	Maize	plastid	92.98	92.75
TraesCS6B01G144100.1	Wheat	cytosol	42.86	92.67
TraesCS7D01G412200.1	Wheat	golgi, nucleus	92.49	92.27
GSMUA_Achr10P...	Banana	cytosol	85.47	92.17
Os06t0701100-02	Rice	extracellular, nucleus, plastid	92.25	92.03
TraesCS7B01G320000.1	Wheat	cytosol	92.25	92.03
TraesCS7A01G419400.1	Wheat	cytosol	92.25	92.03
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	92.01	92.01
KRH44102	Soybean	nucleus	93.7	91.92
GSMUA_Achr7P19690_001	Banana	cytosol	77.72	90.93
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	92.98	86.88
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	92.98	86.88
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	84.5	79.86
HORVU6Hr1G020910.1	Barley	cytosol	92.74	75.84
OQU76995	Sorghum	cytosol	93.22	74.47
TraesCS6B01G144000.1	Wheat	golgi	92.98	69.69
KRH37217	Soybean	endoplasmic reticulum	61.26	62.16
KRH12197	Soybean	nucleus	61.02	62.07
KRH04755	Soybean	cytosol	22.28	34.72
KRH47464	Soybean	nucleus	35.59	34.51
KRH44441	Soybean	cytosol, nucleus	35.59	34.51
KRH52452	Soybean	nucleus	35.59	34.43
KRH61783	Soybean	cytosol	35.59	34.43
KRH48173	Soybean	mitochondrion	36.32	30.0
KRH65098	Soybean	endoplasmic reticulum, nucleus	36.32	29.88
KRH65096	Soybean	nucleus	36.08	29.86
KRH48170	Soybean	endoplasmic reticulum	36.32	29.82
KRG99590	Soybean	endoplasmic reticulum, nucleus	33.9	28.69
KRG93607	Soybean	nucleus	33.66	28.08
KRH40488	Soybean	cytosol	36.32	27.83
KRH02098	Soybean	cytosol	12.59	22.61
KRH51049	Soybean	plastid	24.94	21.82
KRH43643	Soybean	nucleus	27.6	20.28
KRH13813	Soybean	nucleus	27.6	20.28

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	UniProt:A0A0R4J4Z2	EMBL:ACUP02008170	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_13G106200
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH19215	ProteinID:KRH19215	ProteinID:KRH19215.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0001B63A9D	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:22052964..22055868

Molecular Weight (calculated)

46773.2 Da

IEP (calculated)

5.342

GRAVY (calculated)

-0.230

Length

413 amino acids

Sequence
(BLAST)

001: MAGLAPEGSQ FDARQYDSKM SDLLSSDGQD FFTSYDEVYD SFDAMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGILQ
101: QLDYSLTQCQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILSSGVH VVVGTPGRVF DMLRRQSLLP DHIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PSKIQVGVFS ATMPPEALEI TRKFMNKPVR ILVKRDELTL EGIKQFYVNV EREDWKLDTL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR
301: SRDHTVSATH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINFDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTKDDEKM LFDIQKFYNV
401: QVEELPSNVA ELL

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.