CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH62823
KRH70630
KRH70633
KRH75529

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	KRH62823	AT1G26110.1	21798944
AT2G45810.1	KRH70630	AT1G26110.1	21798944
AT2G45810.1	KRH70633	AT1G26110.1	21798944
AT2G45810.1	KRH75529	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04755	Soybean	cytosol	45.45	92.45
CDY54061	Canola	cytosol	53.99	89.26
CDY45702	Canola	cytosol	33.21	86.89
Bra008527.1-P	Field mustard	cytosol	52.32	85.45
Solyc10g017530.2.1	Tomato	nucleus	77.18	84.73
KRH48173	Soybean	mitochondrion	77.92	84.0
KRH65096	Soybean	nucleus	77.74	83.97
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	76.62	83.94
KRH48170	Soybean	endoplasmic reticulum	78.29	83.9
GSMUA_Achr2P10560_001	Banana	cytosol	75.51	83.74
KRH65098	Soybean	endoplasmic reticulum, nucleus	77.92	83.67
Solyc01g094350.2.1	Tomato	nucleus	76.25	82.53
GSMUA_Achr5P12220_001	Banana	cytosol	74.77	81.91
CDX91901	Canola	cytosol	76.07	81.84
CDY51147	Canola	cytosol	75.14	81.65
CDY07205	Canola	cytosol	74.21	81.47
AT4G00660.1	Thale cress	cytosol, mitochondrion	75.88	80.99
Bra037351.1-P	Field mustard	cytosol	76.25	80.59
Bra000965.1-P	Field mustard	cytosol	75.88	79.73
CDX74342	Canola	cytosol	75.7	79.38
Bra007587.1-P	Field mustard	cytosol	68.83	78.44
Bra003442.1-P	Field mustard	cytosol	68.46	77.36
AT3G61240.1	Thale cress	cytosol	71.43	77.31
CDY58787	Canola	cytosol	69.02	77.18
CDY48935	Canola	cytosol, plastid	67.9	77.05
CDX71756	Canola	cytosol	68.09	76.62
CDY37067	Canola	cytosol	71.43	75.49
CDY27357	Canola	cytosol, plastid	71.24	75.44
Bra039312.1-P	Field mustard	cytosol	71.43	74.47
AT2G45810.1	Thale cress	cytosol, plastid	72.54	74.05
Solyc05g048850.2.1	Tomato	mitochondrion	69.39	69.65
KRH23270	Soybean	cytosol	28.01	36.56
KRH10048	Soybean	cytosol, endoplasmic reticulum	28.01	36.56
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	27.83	36.32
KRH52210	Soybean	cytosol, endoplasmic reticulum	27.83	36.32
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	27.83	36.32
KRH12430	Soybean	cytosol	27.64	36.08
KRH37426	Soybean	cytosol, endoplasmic reticulum	27.64	36.08
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	27.64	36.08
KRH47074	Soybean	nucleus	27.64	36.08
KRH44102	Soybean	nucleus	27.83	35.63
KRH12197	Soybean	nucleus	26.53	35.22
KRH37217	Soybean	endoplasmic reticulum	26.53	35.14
KRH61783	Soybean	cytosol	27.09	34.19
KRH52452	Soybean	nucleus	27.09	34.19
KRH44441	Soybean	cytosol, nucleus	26.72	33.8
KRH47464	Soybean	nucleus	26.72	33.8
KRG99590	Soybean	endoplasmic reticulum, nucleus	25.05	27.66
KRG93607	Soybean	nucleus	24.68	26.87
KRH02098	Soybean	cytosol	8.35	19.57
KRH43643	Soybean	nucleus	19.48	18.68
KRH51049	Soybean	plastid	16.14	18.43
KRH13813	Soybean	nucleus	19.11	18.33

Protein Annotations

EntrezGene:100788032	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02006038	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_09G261400
GO:GO:0000166	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006417
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010494	GO:GO:0010501
GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0033962	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K7LG71	EnsemblPlants:KRH40488	ProteinID:KRH40488
ProteinID:KRH40488.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000296E58A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:47938090..47949777

Molecular Weight (calculated)

62144.1 Da

IEP (calculated)

8.781

GRAVY (calculated)

-0.477

Length

539 amino acids

Sequence
(BLAST)

001: MIPEKFPISP LDFVSLGPNH NPILRIFRSQ SKIGGMKNRD REKSPPRMGL GRGLNSNRGF QPRPQQYVQR HMVQHRHHLQ PYQHNHHHHH HQQQRQQHHH
101: HQQQRQWLRK DQLSGGTNTN VVEEVEKTMQ SEAINSSSQD WKARLNIPPP DTCHKTEDVT ATKGNEFEDY FLKRELLMGI YEKGFERPSP IQEECIPIAL
201: TGSDILARAK NGTGKTAAFC IPALEKIDQD NDVIQVAILV PTRELALQTS QVCKDLGKHL KIQVMVTTGG TSLKDDIMRL YQPVHLLVGT PGRILDLAKK
301: GVCILNDCSM LVMDEADKLL SQEFQPSIEQ LIQFLPGNRQ ILMFSATFPV TVKDFKDRYL RKPYIVNLMD ELTLKGITQY YAFLEERQKV HCLNTLFSKL
401: QINQSIIFCN SVNRVELLAK KITELGYSCF YIHAKMLQDH RNRVFHDFCN GACRNLVCTD LFTRGIDIQA VNVVINFDFP KNSETYLHRV GRSGRFGHLG
501: LAVNLITYED RFNLYRIEQE LGTEIKQIPP HIDQAIYCR

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.