Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45810.1 | CDY20530 | AT1G26110.1 | 21798944 |
| AT2G45810.1 | CDY36091 | AT1G26110.1 | 21798944 |
| AT2G45810.1 | CDY51127 | AT1G26110.1 | 21798944 |
| AT2G45810.1 | CDY55955 | AT1G26110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039312.1-P | Field mustard | cytosol | 98.43 | 96.91 |
| CDY37067 | Canola | cytosol | 96.86 | 96.67 |
| CDY45702 | Canola | cytosol | 37.72 | 93.2 |
| KRH04755 | Soybean | cytosol | 46.56 | 89.43 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 92.73 | 89.39 |
| CDY54061 | Canola | cytosol | 54.03 | 84.36 |
| CDY58787 | Canola | cytosol | 79.76 | 84.23 |
| CDY48935 | Canola | cytosol, plastid | 78.39 | 84.0 |
| CDX71756 | Canola | cytosol | 78.59 | 83.51 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 76.62 | 81.25 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 77.21 | 80.04 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 53.44 | 80.0 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 77.01 | 79.67 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 75.64 | 79.22 |
| Solyc10g017530.2.1 | Tomato | nucleus | 76.23 | 79.02 |
| CDY51147 | Canola | cytosol | 76.42 | 78.43 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 75.64 | 78.25 |
| KRH65096 | Soybean | nucleus | 76.62 | 78.16 |
| CDY07205 | Canola | cytosol | 75.25 | 78.0 |
| KRH48173 | Soybean | mitochondrion | 76.62 | 78.0 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 76.82 | 77.89 |
| CDX91901 | Canola | cytosol | 76.42 | 77.64 |
| KRH48170 | Soybean | endoplasmic reticulum | 76.62 | 77.53 |
| Solyc01g094350.2.1 | Tomato | nucleus | 75.44 | 77.11 |
| Os04t0533000-02 | Rice | cytosol | 75.05 | 76.71 |
| CDX74342 | Canola | cytosol | 77.01 | 76.26 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 75.44 | 75.59 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 73.67 | 75.15 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 73.87 | 75.05 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 74.26 | 74.41 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 75.44 | 74.13 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 72.69 | 73.56 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 75.44 | 73.42 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 75.05 | 73.04 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 75.05 | 73.04 |
| Zm00001d051268_P004 | Maize | extracellular | 74.85 | 72.99 |
| EER91410 | Sorghum | cytosol | 72.69 | 72.98 |
| EER91411 | Sorghum | cytosol | 72.5 | 72.78 |
| Zm00001d017384_P008 | Maize | cytosol | 74.46 | 72.19 |
| Os10t0503700-01 | Rice | plasma membrane | 73.67 | 71.98 |
| KRH40488 | Soybean | cytosol | 75.44 | 71.24 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 72.1 | 69.9 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 72.1 | 69.9 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 71.91 | 69.58 |
| GSMUA_Achr11P... | Banana | cytosol | 75.64 | 68.14 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 72.3 | 65.25 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 68.57 | 64.99 |
| CDY26130 | Canola | cytosol | 8.25 | 41.58 |
| CDY37498 | Canola | cytosol, mitochondrion | 7.47 | 41.3 |
| CDY67069 | Canola | cytosol | 7.66 | 38.61 |
| CDY10607 | Canola | cytosol | 29.27 | 36.25 |
| CDY32586 | Canola | cytosol | 26.72 | 35.98 |
| CDY02469 | Canola | cytosol | 29.08 | 35.92 |
| CDY08220 | Canola | cytosol | 29.08 | 35.92 |
| CDY39079 | Canola | cytosol | 29.08 | 35.92 |
| CDY24057 | Canola | cytosol | 28.88 | 35.68 |
| CDY33073 | Canola | cytosol | 28.49 | 35.19 |
| CDY22577 | Canola | cytosol | 10.22 | 34.9 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.27 | 34.89 |
| CDX97528 | Canola | cytosol | 29.08 | 34.82 |
| CDY55205 | Canola | cytosol | 28.88 | 34.75 |
| CDX82505 | Canola | cytosol | 28.88 | 34.35 |
| CDX82280 | Canola | cytosol | 27.11 | 33.82 |
| CDX75739 | Canola | cytosol | 28.88 | 33.72 |
| CDY24617 | Canola | cytosol | 26.92 | 33.58 |
| CDY22956 | Canola | cytosol | 26.92 | 33.58 |
| CDY33416 | Canola | cytosol | 26.92 | 33.58 |
| CDY51692 | Canola | cytosol | 26.92 | 33.58 |
| CDY42205 | Canola | cytosol | 26.92 | 33.58 |
| CDY72259 | Canola | cytosol | 14.54 | 33.33 |
| CDY51112 | Canola | cytosol | 28.09 | 32.5 |
| CDY58940 | Canola | cytosol | 25.74 | 32.43 |
| CDX85725 | Canola | cytosol | 28.09 | 32.35 |
| CDY03623 | Canola | cytosol | 25.54 | 32.18 |
| CDX70383 | Canola | cytosol | 27.9 | 31.77 |
| CDY11154 | Canola | cytosol | 12.38 | 31.19 |
| CDY71952 | Canola | cytosol | 24.95 | 30.46 |
| CDX85726 | Canola | cytosol | 27.9 | 28.98 |
| CDX69778 | Canola | cytosol | 27.9 | 28.69 |
| CDX78412 | Canola | cytosol | 27.9 | 28.57 |
| CDY51111 | Canola | cytosol | 13.95 | 28.51 |
| CDY56825 | Canola | cytosol | 12.77 | 28.51 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 27.9 | 27.15 |
| CDY54037 | Canola | cytosol | 14.15 | 26.97 |
| CDY53867 | Canola | cytosol | 21.81 | 26.3 |
| CDX67556 | Canola | cytosol | 24.36 | 26.27 |
| CDX95397 | Canola | cytosol | 25.34 | 26.11 |
| CDX76225 | Canola | cytosol | 25.34 | 26.01 |
| CDY13319 | Canola | cytosol | 24.56 | 25.51 |
| CDX72939 | Canola | mitochondrion, nucleus | 22.2 | 24.25 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 13.95 | 23.75 |
| CDY47205 | Canola | plastid | 20.04 | 21.34 |
| CDY02574 | Canola | plastid | 20.04 | 21.34 |
| CDY68148 | Canola | nucleus | 22.4 | 15.43 |
| CDY49860 | Canola | cytosol | 1.38 | 5.6 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078GQ75 | UniProt:A0A078GQ75 | EnsemblPlants:CDY27357 | ProteinID:CDY27357 |
| ProteinID:CDY27357.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00037294001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF555 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EEFC78 | SEG:seg | : | : | : | : |
Description
BnaC04g50480DBnaC04g50480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ75]
Coordinates
chrLK032203:-:231826..234624
Molecular Weight (calculated)
58188.8 Da
IEP (calculated)
8.230
GRAVY (calculated)
-0.467
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNNSSRGRF PPGIGAPDPN FQSRNPNPNP NPPPQQFLHS RTPFPQQYVQ SRTPLPDAQQ YVQRGYPQQN PPQQIQQQPQ WSTRAQLPGD SSYVEEVEKT
101: VQSEANSNQD WKATLKLPPR DNRYQTEDVT ATKGNEFEDY FLKRDLLRGI YEKGFEKPSP IQEESIPIAL TGSDILARAK NGTGKTGAFC IPTLEKIDPE
201: NNVIQAVILV PTRELALQTS QVCKELSKYL KIEVMVTTGG TSLRDDIMRL YQPVHLLVGT PGRILDLTKK GVCVLKDCAM LVMDEADKLL SAEFQPSIEE
301: LIQFLPQNRQ ILMFSATFPV TVKYFKDRYL RKPYIINLMD QLTLMGVTQY YAFVEERQKV HCLNTLFSKL QINQSIIFCN SVNRVELLAK KITELGYSCF
401: YIHAKMAQDH RNRVFHDFRN GACRNLVCTD LFTRGIDIQA VNVVINFDFP RTSESYLHRV GRSGRYGHLG LAVNLVTYED RFKMYQTEQE LGTEIKPIPS
501: LIDKAIYCQ
101: VQSEANSNQD WKATLKLPPR DNRYQTEDVT ATKGNEFEDY FLKRDLLRGI YEKGFEKPSP IQEESIPIAL TGSDILARAK NGTGKTGAFC IPTLEKIDPE
201: NNVIQAVILV PTRELALQTS QVCKELSKYL KIEVMVTTGG TSLRDDIMRL YQPVHLLVGT PGRILDLTKK GVCVLKDCAM LVMDEADKLL SAEFQPSIEE
301: LIQFLPQNRQ ILMFSATFPV TVKYFKDRYL RKPYIINLMD QLTLMGVTQY YAFVEERQKV HCLNTLFSKL QINQSIIFCN SVNRVELLAK KITELGYSCF
401: YIHAKMAQDH RNRVFHDFRN GACRNLVCTD LFTRGIDIQA VNVVINFDFP RTSESYLHRV GRSGRYGHLG LAVNLVTYED RFKMYQTEQE LGTEIKPIPS
501: LIDKAIYCQ
001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
Arabidopsis Description
RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.