Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07205 | Canola | cytosol | 96.37 | 97.35 |
| CDY54061 | Canola | cytosol | 63.71 | 96.93 |
| Bra037351.1-P | Field mustard | cytosol | 99.4 | 96.67 |
| CDX91901 | Canola | cytosol | 93.95 | 93.01 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 93.75 | 92.08 |
| CDX74342 | Canola | cytosol | 94.96 | 91.63 |
| KRH04755 | Soybean | cytosol | 47.98 | 89.81 |
| CDY45702 | Canola | cytosol | 37.1 | 89.32 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 83.67 | 86.46 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 84.48 | 85.34 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 85.69 | 84.66 |
| KRH48173 | Soybean | mitochondrion | 85.28 | 84.6 |
| KRH48170 | Soybean | endoplasmic reticulum | 85.48 | 84.29 |
| KRH65096 | Soybean | nucleus | 84.68 | 84.17 |
| Solyc10g017530.2.1 | Tomato | nucleus | 82.86 | 83.71 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 82.66 | 83.33 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 81.45 | 83.13 |
| Solyc01g094350.2.1 | Tomato | nucleus | 82.86 | 82.53 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 56.45 | 82.35 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 80.04 | 80.69 |
| Os04t0533000-02 | Rice | cytosol | 80.85 | 80.52 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 81.65 | 79.72 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 80.04 | 79.56 |
| CDY58787 | Canola | cytosol | 77.02 | 79.25 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 80.04 | 79.24 |
| CDX71756 | Canola | cytosol | 76.41 | 79.12 |
| CDY48935 | Canola | cytosol, plastid | 75.2 | 78.53 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 81.45 | 77.99 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 79.64 | 77.76 |
| CDY37067 | Canola | cytosol | 79.84 | 77.65 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 81.25 | 77.06 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 81.05 | 76.86 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 81.05 | 76.86 |
| CDY27357 | Canola | cytosol, plastid | 78.43 | 76.42 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 77.42 | 76.34 |
| Zm00001d051268_P004 | Maize | extracellular | 80.24 | 76.25 |
| Zm00001d017384_P008 | Maize | cytosol | 80.24 | 75.81 |
| EER91410 | Sorghum | cytosol | 77.42 | 75.74 |
| Os10t0503700-01 | Rice | plasma membrane | 79.44 | 75.62 |
| EER91411 | Sorghum | cytosol | 77.22 | 75.54 |
| KRH40488 | Soybean | cytosol | 81.65 | 75.14 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 78.63 | 74.29 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 78.43 | 74.1 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 78.23 | 73.76 |
| GSMUA_Achr11P... | Banana | cytosol | 82.06 | 72.04 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 78.23 | 68.79 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 74.19 | 68.53 |
| CDY26130 | Canola | cytosol | 8.67 | 42.57 |
| CDY37498 | Canola | cytosol, mitochondrion | 7.86 | 42.39 |
| CDY67069 | Canola | cytosol | 7.66 | 37.62 |
| CDY02469 | Canola | cytosol | 30.85 | 37.14 |
| CDY08220 | Canola | cytosol | 30.85 | 37.14 |
| CDY32586 | Canola | cytosol | 28.23 | 37.04 |
| CDY10607 | Canola | cytosol | 30.65 | 36.98 |
| CDY39079 | Canola | cytosol | 30.65 | 36.89 |
| CDY24057 | Canola | cytosol | 30.65 | 36.89 |
| CDY22577 | Canola | cytosol | 10.89 | 36.24 |
| CDY33073 | Canola | cytosol | 30.04 | 36.16 |
| CDY24617 | Canola | cytosol | 29.44 | 35.78 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 30.65 | 35.6 |
| CDY33416 | Canola | cytosol | 29.23 | 35.54 |
| CDY42205 | Canola | cytosol | 29.23 | 35.54 |
| CDX82280 | Canola | cytosol | 29.23 | 35.54 |
| CDY22956 | Canola | cytosol | 29.23 | 35.54 |
| CDX97528 | Canola | cytosol | 30.44 | 35.53 |
| CDY55205 | Canola | cytosol | 30.24 | 35.46 |
| CDY51692 | Canola | cytosol | 29.03 | 35.29 |
| CDX82505 | Canola | cytosol | 30.04 | 34.81 |
| CDY72259 | Canola | cytosol | 15.32 | 34.23 |
| CDX75739 | Canola | cytosol | 30.04 | 34.17 |
| CDY58940 | Canola | cytosol | 27.82 | 34.16 |
| CDY03623 | Canola | cytosol | 27.62 | 33.91 |
| CDY51112 | Canola | cytosol | 29.44 | 33.18 |
| CDX85725 | Canola | cytosol | 29.44 | 33.03 |
| CDX70383 | Canola | cytosol | 29.44 | 32.66 |
| CDY51111 | Canola | cytosol | 15.73 | 31.33 |
| CDY11154 | Canola | cytosol | 12.7 | 31.19 |
| CDY71952 | Canola | cytosol | 25.81 | 30.7 |
| CDX85726 | Canola | cytosol | 29.64 | 30.0 |
| CDX69778 | Canola | cytosol | 29.44 | 29.49 |
| CDX78412 | Canola | cytosol | 29.44 | 29.38 |
| CDY56825 | Canola | cytosol | 13.1 | 28.51 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 29.44 | 27.92 |
| CDY54037 | Canola | cytosol | 14.72 | 27.34 |
| CDY53867 | Canola | cytosol | 22.78 | 26.78 |
| CDX67556 | Canola | cytosol | 25.2 | 26.48 |
| CDX76225 | Canola | cytosol | 26.41 | 26.41 |
| CDX95397 | Canola | cytosol | 26.21 | 26.32 |
| CDY13319 | Canola | cytosol | 25.4 | 25.71 |
| CDX72939 | Canola | mitochondrion, nucleus | 23.19 | 24.68 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.11 | 23.41 |
| CDY02574 | Canola | plastid | 21.37 | 22.18 |
| CDY47205 | Canola | plastid | 20.97 | 21.76 |
| CDY68148 | Canola | nucleus | 23.39 | 15.7 |
| CDY49860 | Canola | cytosol | 1.61 | 6.4 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078IMJ4 | UniProt:A0A078IMJ4 | EnsemblPlants:CDY51147 | ProteinID:CDY51147 |
| ProteinID:CDY51147.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00098333001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF555 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EEDE19 | SEG:seg | : | : | : | : |
Description
BnaA09g51820DBnaA09g51820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMJ4]
Coordinates
chrLK032970:-:30137..33691
Molecular Weight (calculated)
56459.8 Da
IEP (calculated)
8.250
GRAVY (calculated)
-0.371
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNNNNRGR YPPGIGAGRA AVNPNPNFQS RPGYQQQPPP QYFQQATSQQ VQQQHGYQQQ QQWLRRPQIS GGNSNGDAVA EVEKSVLSEA VDTNSEDWKA
101: RLKLPAPDTR FRTEDVTATK GNEFEDYFLK RELLMGIYEK GFERPSPIQE ESIPIALTGR DILARAKNGT GKTAAFCIPV LEKIDQDNNV IQAVIIVPTR
201: ELALQTSQVC KELGKHLKIQ VMVTTGGTSL KDDIMRLYQP VHLLVGTPGR ILDLTKKGVC VLKDCSVFVM DEADKLLSQE FQPSVEHLIS FLPQNRQILM
301: FSATFPVTVK DFKDRFLTNP YIINLMDELT LKGITQFYAF VEERQKIHCL NTLFSKLQIN QSIIFCNSVN RVELLAKKIT ELGYSCFYIH AKMLQDHRNR
401: VFHDFRNGAC RNLVCTDLFT RGIDIQAVNV VINFDFPKTA ETYLHRVGRS GRFGHLGLAV NLITYEDRFN LYRIEQELGT EIKQIPPHID QAIYCQ
101: RLKLPAPDTR FRTEDVTATK GNEFEDYFLK RELLMGIYEK GFERPSPIQE ESIPIALTGR DILARAKNGT GKTAAFCIPV LEKIDQDNNV IQAVIIVPTR
201: ELALQTSQVC KELGKHLKIQ VMVTTGGTSL KDDIMRLYQP VHLLVGTPGR ILDLTKKGVC VLKDCSVFVM DEADKLLSQE FQPSVEHLIS FLPQNRQILM
301: FSATFPVTVK DFKDRFLTNP YIINLMDELT LKGITQFYAF VEERQKIHCL NTLFSKLQIN QSIIFCNSVN RVELLAKKIT ELGYSCFYIH AKMLQDHRNR
401: VFHDFRNGAC RNLVCTDLFT RGIDIQAVNV VINFDFPKTA ETYLHRVGRS GRFGHLGLAV NLITYEDRFN LYRIEQELGT EIKQIPPHID QAIYCQ
001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
Arabidopsis Description
RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.