Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54061 | Canola | cytosol | 61.98 | 96.01 |
| CDY51147 | Canola | cytosol | 92.08 | 93.75 |
| Bra037351.1-P | Field mustard | cytosol | 94.46 | 93.53 |
| CDY07205 | Canola | cytosol | 90.89 | 93.48 |
| CDX91901 | Canola | cytosol | 92.67 | 93.41 |
| CDX74342 | Canola | cytosol | 94.06 | 92.41 |
| Bra000965.1-P | Field mustard | cytosol | 93.86 | 92.4 |
| Bra008527.1-P | Field mustard | cytosol | 59.6 | 91.21 |
| KRH04755 | Soybean | cytosol | 47.52 | 90.57 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 82.97 | 87.29 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 83.76 | 86.15 |
| KRH48170 | Soybean | endoplasmic reticulum | 85.35 | 85.69 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 84.95 | 85.46 |
| KRH48173 | Soybean | mitochondrion | 84.55 | 85.4 |
| Solyc10g017530.2.1 | Tomato | nucleus | 82.97 | 85.34 |
| KRH65096 | Soybean | nucleus | 83.76 | 84.77 |
| Solyc01g094350.2.1 | Tomato | nucleus | 82.77 | 83.94 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 81.39 | 83.54 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 80.2 | 83.33 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 56.04 | 83.24 |
| Os04t0533000-02 | Rice | cytosol | 80.99 | 82.13 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 81.78 | 81.3 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 80.2 | 81.16 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 78.81 | 80.89 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 80.0 | 80.64 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 82.18 | 80.12 |
| AT3G61240.1 | Thale cress | cytosol | 78.81 | 79.92 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 80.0 | 79.53 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 82.18 | 79.35 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 81.98 | 79.16 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 81.58 | 78.78 |
| Zm00001d051268_P004 | Maize | extracellular | 81.19 | 78.54 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 77.43 | 77.73 |
| Zm00001d017384_P008 | Maize | cytosol | 80.59 | 77.52 |
| EER91410 | Sorghum | cytosol | 77.82 | 77.51 |
| EER91411 | Sorghum | cytosol | 77.62 | 77.32 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 80.4 | 76.89 |
| Os10t0503700-01 | Rice | plasma membrane | 79.01 | 76.58 |
| KRH40488 | Soybean | cytosol | 80.99 | 75.88 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 78.02 | 75.05 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 77.82 | 74.86 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 77.62 | 74.52 |
| GSMUA_Achr11P... | Banana | cytosol | 81.58 | 72.92 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 78.02 | 69.86 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 73.86 | 69.46 |
| AT1G72730.1 | Thale cress | cytosol | 29.5 | 35.99 |
| AT1G54270.1 | Thale cress | cytosol | 29.11 | 35.68 |
| AT3G13920.5 | Thale cress | cytosol | 29.5 | 35.56 |
| AT3G19760.1 | Thale cress | cytosol | 28.71 | 35.54 |
| AT1G51380.1 | Thale cress | cytosol | 26.93 | 34.69 |
| AT5G11170.1 | Thale cress | cytosol | 28.12 | 33.26 |
| AT5G11200.2 | Thale cress | cytosol | 28.12 | 29.22 |
| AT3G53110.1 | Thale cress | cytosol | 25.35 | 25.81 |
| AT5G19210.2 | Thale cress | plastid | 20.79 | 22.25 |
| AT1G12770.2 | Thale cress | mitochondrion, plastid | 21.98 | 20.15 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:828042 | UniProt:A0A178UXT2 | ProteinID:AAC13628.1 | ProteinID:AEE81915.1 |
| ProteinID:AEE81916.1 | EMBL:AJ010460 | ArrayExpress:AT4G00660 | EnsemblPlantsGene:AT4G00660 | RefSeq:AT4G00660 | TAIR:AT4G00660 |
| RefSeq:AT4G00660-TAIR-G | EnsemblPlants:AT4G00660.1 | TAIR:AT4G00660.1 | EMBL:AY080837 | EMBL:AY113985 | Unigene:At.25593 |
| ProteinID:CAB80875.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0006417 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010494 | GO:GO:0010501 |
| GO:GO:0016032 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0033962 | GO:GO:0051028 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_191975.2 |
| RefSeq:NP_849535.1 | ProteinID:OAO98769.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF555 | UniProt:Q8RXK6 | Symbol:RH8 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI00000A0762 | SEG:seg |
Description
RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
Coordinates
chr4:+:274257..278737
Molecular Weight (calculated)
57690.2 Da
IEP (calculated)
8.249
GRAVY (calculated)
-0.437
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.