Factsheet for TraesCS2B01G387200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G006100.1
TraesCS3D01G004500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	TraesCS3A01G006100.1	AT1G26110.1	21798944
AT2G45810.1	TraesCS3D01G004500.1	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G370200.2	Wheat	cytosol	97.39	97.01
TraesCS2D01G366700.1	Wheat	cytosol	97.8	96.06
KRH04755	Soybean	cytosol	48.5	91.32
Os04t0533000-02	Rice	cytosol	90.18	90.36
CDY54061	Canola	cytosol	57.72	88.34
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	82.36	85.62
CDY45702	Canola	cytosol	35.27	85.44
Bra008527.1-P	Field mustard	cytosol	55.91	84.55
TraesCS6B01G265300.1	Wheat	cytosol	88.38	84.32
Solyc10g017530.2.1	Tomato	nucleus	81.16	82.48
KRH48173	Soybean	mitochondrion	81.96	81.8
KRH48170	Soybean	endoplasmic reticulum	82.36	81.71
KRH65098	Soybean	endoplasmic reticulum, nucleus	81.96	81.47
KRH65096	Soybean	nucleus	81.36	81.36
CDY07205	Canola	cytosol	79.36	80.65
Solyc01g094350.2.1	Tomato	nucleus	80.16	80.32
AT4G00660.1	Thale cress	cytosol, mitochondrion	81.16	80.2
CDY51147	Canola	cytosol	79.56	80.04
TraesCS1B01G189900.1	Wheat	cytosol	83.97	79.81
CDX91901	Canola	cytosol	79.76	79.44
Bra037351.1-P	Field mustard	cytosol	80.36	78.63
CDX74342	Canola	cytosol	80.56	78.21
Bra000965.1-P	Field mustard	cytosol	80.36	78.17
Bra007587.1-P	Field mustard	cytosol	73.75	77.8
Bra003442.1-P	Field mustard	cytosol	74.35	77.78
CDY58787	Canola	cytosol	74.55	77.18
CDY48935	Canola	cytosol, plastid	73.15	76.84
CDX71756	Canola	cytosol	73.55	76.62
AT3G61240.1	Thale cress	cytosol	75.75	75.9
CDY37067	Canola	cytosol	76.15	74.51
CDY27357	Canola	cytosol, plastid	75.15	73.67
Bra039312.1-P	Field mustard	cytosol	76.15	73.5
GSMUA_Achr11P...	Banana	cytosol	82.57	72.92
AT2G45810.1	Thale cress	cytosol, plastid	76.55	72.35
Solyc05g048850.2.1	Tomato	mitochondrion	73.75	68.53
TraesCS6B01G144100.1	Wheat	cytosol	14.63	38.22
TraesCS7B01G320000.1	Wheat	cytosol	31.06	37.44
TraesCS2B01G584200.1	Wheat	mitochondrion	28.46	34.89
TraesCS6B01G472700.1	Wheat	nucleus	28.66	34.71
TraesCS1B01G477500.1	Wheat	cytosol	29.46	34.11
TraesCS3B01G224400.1	Wheat	cytosol	29.06	33.88
TraesCS6B01G144000.1	Wheat	golgi	31.46	28.49
TraesCS6B01G217800.1	Wheat	cytosol	23.45	27.79
TraesCS5B01G534600.1	Wheat	cytosol	23.85	24.69
TraesCS4B01G274200.1	Wheat	cytosol	23.85	23.52
TraesCS3B01G592900.1	Wheat	plastid	20.64	22.99
TraesCS6B01G262800.1	Wheat	mitochondrion	21.04	17.47
TraesCS6B01G217700.1	Wheat	cytosol	25.85	9.66

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF352	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2B01G387200	EnsemblPlants:TraesCS2B01G387200.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:550400245..550405953

Molecular Weight (calculated)

56478.9 Da

IEP (calculated)

8.764

GRAVY (calculated)

-0.444

Length

499 amino acids

Sequence
(BLAST)

001: MDQRARYPPG IGNGRGGNPN YYGRGPPPTQ QHQHQQPPQQ QQQAQGQRQS QHSQHHSQQL QHQQWLRRNQ TAGEAAAGAA RASEHHAPAA AGDADLSSQD
101: WKAQLKLPPP DTRYQTEDVT ATKGNEFEDY FLKRELLMGI YEKGFERPSP IQEESIPIAL TGSDILARAK NGTGKTAAFC IPALEKIDQD KNAIQVVILV
201: PTRELALQTS QVCKELGKHL KIQVMVTTGG TSLKDDIVRL YQPVHLLVGT PGRVLDLTKK GICILKDCSM LIMDEADKLL SPEFQPSVEQ LIRYLPSSRQ
301: ILMFSATFPV TVKAFKDKYL PKPYVINLMD ELTLKGITQF YAFVEERQKV HCLNTLFSKL QINQSIIFCN SVNRVELLAK KITELGYSCF YIHAKMLQDH
401: RNRVFHDFRN GACRNLVCTD LFTRGIDIQA VNVVINFDFP KTAETYLHRV GRSGRFGHLG LAVNLITYED RFNLYRIEQE LGTEIKPIPP QIDRTIYCQ

Best Arabidopsis Sequence Match ( AT3G61240.2 )
(BLAST)

001: MNTNRGRYPP GVGTGRGAPP NPDYHQSYRQ QQPPQDQQYV QRGYSQNPQQ MQLQQQHQQQ QQQQQWSRRP QLPGNASNAN EVVQQTTQPE ASSDANGQDW
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ

Arabidopsis Description

RH12DEAD-box ATP-dependent RNA helicase 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2E0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.