Factsheet for Bra008527.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54061	Canola	cytosol	93.94	95.09
KRH04755	Soybean	cytosol	56.97	70.94
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	71.52	69.41
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	87.27	60.0
Bra037351.1-P	Field mustard	cytosol	92.12	59.61
AT4G00660.1	Thale cress	cytosol, mitochondrion	91.21	59.6
Bra000965.1-P	Field mustard	cytosol	91.52	58.87
VIT_15s0046g03200.t01	Wine grape	cytosol	86.67	58.25
GSMUA_Achr2P10560_001	Banana	cytosol	85.45	58.02
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	86.36	57.93
Solyc10g017530.2.1	Tomato	nucleus	85.76	57.64
Solyc01g094350.2.1	Tomato	nucleus	86.97	57.63
KRH48173	Soybean	mitochondrion	86.67	57.2
KRH65098	Soybean	endoplasmic reticulum, nucleus	86.67	56.97
KRH65096	Soybean	nucleus	86.06	56.91
KRH48170	Soybean	endoplasmic reticulum	86.67	56.86
GSMUA_Achr5P12220_001	Banana	cytosol	84.55	56.71
Os04t0533000-02	Rice	cytosol	85.45	56.63
TraesCS2B01G387200.1	Wheat	cytosol	84.55	55.91
TraesCS2A01G370200.2	Wheat	cytosol	84.85	55.89
Bra007587.1-P	Field mustard	cytosol	79.7	55.6
Bra003442.1-P	Field mustard	cytosol	80.3	55.56
Os02t0641800-02	Rice	plasma membrane, plastid	85.45	55.51
TraesCS2D01G366700.1	Wheat	cytosol	84.55	54.92
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	82.73	54.27
HORVU6Hr1G060630.1	Barley	cytosol	85.15	54.25
EER91411	Sorghum	cytosol	83.33	54.24
EER91410	Sorghum	cytosol	83.33	54.24
TraesCS6B01G265300.1	Wheat	cytosol	85.45	53.92
Zm00001d051268_P004	Maize	extracellular	85.15	53.83
TraesCS6D01G219400.1	Wheat	cytosol	85.15	53.73
TraesCS6A01G236800.1	Wheat	cytosol	85.15	53.73
Zm00001d017384_P008	Maize	cytosol	85.15	53.52
Os10t0503700-01	Rice	plasma membrane	83.64	52.98
KRH40488	Soybean	cytosol	85.45	52.32
Solyc05g048850.2.1	Tomato	mitochondrion	84.55	51.96
Bra039312.1-P	Field mustard	cytosol	80.91	51.64
TraesCS1B01G189900.1	Wheat	cytosol	81.52	51.24
TraesCS1A01G174600.1	Wheat	cytosol	81.52	51.24
TraesCS1D01G164500.1	Wheat	cytosol	81.52	51.14
GSMUA_Achr11P...	Banana	cytosol	85.76	50.09
HORVU1Hr1G046020.1	Barley	cytosol	81.52	47.7
Bra030892.1-P	Field mustard	cytosol	7.88	38.24
Bra037977.1-P	Field mustard	cytosol	38.48	30.83
Bra030893.1-P	Field mustard	cytosol	37.88	30.34
Bra029124.1-P	Field mustard	cytosol	37.58	30.24
Bra014365.1-P	Field mustard	cytosol	37.58	30.1
Bra021517.1-P	Field mustard	cytosol	37.58	30.1
Bra027387.1-P	Field mustard	cytosol	37.58	30.1
Bra001530.1-P	Field mustard	cytosol	37.88	30.05
Bra038231.1-P	Field mustard	cytosol	36.67	29.66
Bra022449.1-P	Field mustard	cytosol	36.67	29.66
Bra032127.1-P	Field mustard	cytosol	36.67	29.66
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.88	29.27
Bra014267.1-P	Field mustard	cytosol	34.24	27.97
Bra023311.1-P	Field mustard	cytosol	33.94	26.23
Bra023312.1-P	Field mustard	cytosol	33.33	25.23
Bra008984.1-P	Field mustard	cytosol	31.82	24.65
Bra008983.1-P	Field mustard	cytosol	31.82	22.25
Bra006091.1-P	Field mustard	cytosol	33.33	20.99
Bra040687.1-P	Field mustard	cytosol	31.52	20.97
Bra028547.1-P	Field mustard	cytosol	30.61	20.57
Bra023712.1-P	Field mustard	plastid	25.76	17.78
Bra016037.1-P	Field mustard	cytosol	37.58	17.06

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra008527	EnsemblPlants:Bra008527.1	EnsemblPlants:Bra008527.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4CWD0	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002547004	:

Description

AT4G00660 (E=2e-109) | DEAD/DEAH box helicase, putative

Coordinates

chrA02:+:16207342..16208899

Molecular Weight (calculated)

37532.3 Da

IEP (calculated)

8.782

GRAVY (calculated)

-0.002

Length

330 amino acids

Sequence
(BLAST)

001: MGIYEKGFER PSPIQEVSIL IALTGRDILA RAKNGTGKTV SFCIPVLEKL TKITTLFKVP LPSVIIVPTR ELALQTSQVC KELGKHLKIQ VMVTTGGTSL
101: KDDIMRLYQP VHLLVGTPGR ILDLTKKGVC VLKDCSVFVM DEADKLLSQE FQPSVEHLIS FLPQNRQILM FLATFPVTVK DFKDRLLKNP YIINLMDELT
201: LKGITQFCAF VEERQKIHCL NTLFSKMLQD HRNRAFHDFR NGACRNLVCT DLFTRGIDIQ AVNVVINFDF PKNAETYLHR VGRSGRFGHL GLAVNLITYE
301: DRLNLYRIEQ ELGTEIKQIQ PHIDQAIYCQ

Best Arabidopsis Sequence Match ( AT2G45810.1 )
(BLAST)

001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ

Arabidopsis Description

RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.