Factsheet for Os04t0533000-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0111200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	Os01t0111200-01	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04755	Soybean	cytosol	48.59	91.32
Os02t0641800-02	Rice	plasma membrane, plastid	92.17	90.35
TraesCS2B01G387200.1	Wheat	cytosol	90.36	90.18
TraesCS2A01G370200.2	Wheat	cytosol	90.16	89.62
CDY54061	Canola	cytosol	58.43	89.26
TraesCS2D01G366700.1	Wheat	cytosol	90.16	88.39
CDY45702	Canola	cytosol	35.94	86.89
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	82.53	85.62
Bra008527.1-P	Field mustard	cytosol	56.63	85.45
Solyc10g017530.2.1	Tomato	nucleus	83.13	84.32
KRH65098	Soybean	endoplasmic reticulum, nucleus	83.13	82.47
KRH48173	Soybean	mitochondrion	82.53	82.2
KRH65096	Soybean	nucleus	82.33	82.16
KRH48170	Soybean	endoplasmic reticulum	82.93	82.11
Solyc01g094350.2.1	Tomato	nucleus	81.33	81.33
AT4G00660.1	Thale cress	cytosol, mitochondrion	82.13	80.99
CDY07205	Canola	cytosol	79.72	80.86
CDY51147	Canola	cytosol	80.52	80.85
CDX91901	Canola	cytosol	81.12	80.64
Os10t0503700-01	Rice	plasma membrane	84.34	80.61
Bra037351.1-P	Field mustard	cytosol	81.73	79.8
CDX74342	Canola	cytosol	81.33	78.79
Bra000965.1-P	Field mustard	cytosol	81.12	78.75
Bra007587.1-P	Field mustard	cytosol	73.9	77.8
Bra003442.1-P	Field mustard	cytosol	74.5	77.78
CDY58787	Canola	cytosol	74.7	77.18
CDY48935	Canola	cytosol, plastid	73.29	76.84
CDX71756	Canola	cytosol	73.9	76.83
AT3G61240.1	Thale cress	cytosol	76.31	76.31
CDY37067	Canola	cytosol	77.51	75.69
CDY27357	Canola	cytosol, plastid	76.71	75.05
Bra039312.1-P	Field mustard	cytosol	77.51	74.66
AT2G45810.1	Thale cress	cytosol, plastid	77.71	73.3
GSMUA_Achr11P...	Banana	cytosol	83.13	73.27
Solyc05g048850.2.1	Tomato	mitochondrion	74.5	69.09
Os06t0701100-02	Rice	extracellular, nucleus, plastid	31.12	37.44
Os02t0146600-01	Rice	plastid	30.92	37.2
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	29.12	35.89
Os01t0639100-01	Rice	nucleus	29.12	35.89
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	29.32	33.8
Os01t0549700-01	Rice	cytosol, plastid	29.32	33.8
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	24.9	24.55
Os01t0970600-01	Rice	plastid	19.48	20.46
Os03t0219700-01	Rice	plastid	21.08	18.32
Os02t0636300-01	Rice	nucleus	20.68	17.98
Os02t0221300-01	Rice	cytosol	26.31	14.87

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4336501	EMBL:AK071636	EMBL:AK101477	ProteinID:BAF15322.1
ProteinID:BAS90229.1	ProteinID:CAE04571.1	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EAZ31443.1	GO:GO:0000166	GO:GO:0000932
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0006412	GO:GO:0006417
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010494
GO:GO:0010501	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0033962	GO:GO:0051028
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os04g0533000
EnsemblPlants:Os04t0533000-02	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF352	UniProt:Q7XMK8	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00001B1A90	RefSeq:XP_015636229.1
RefSeq:XP_015636231.1	RefSeq:XP_015636232.1	SEG:seg	:	:	:

Description

RNA helicase 6Similar to RNA helicase (Fragment). (Os04t0533000-01);Similar to RNA helicase (Fragment). (Os04t0533000-02)

Coordinates

chr4:+:26644104..26650189

Molecular Weight (calculated)

56714.3 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.474

Length

498 amino acids

Sequence
(BLAST)

001: MDPRARYPPG IGNGRGGNPN YYGRGPPPSQ HQQHQHQHQQ PPHPHHHQYV QRQPQPQQTP HNSQHQQWLR RNQIAAEAAG ASEQKAPPVA DGIDSSSQDW
101: KAQLKLPPQD TRYRTEDVTA TKGNEFEDYF LKRELLMGIY EKGFERPSPI QEESIPIALT GSDILARAKN GTGKTAAFCI PALEKIDQDK NAIQVVILVP
201: TRELALQTSQ VCKELGKHLK IQVMVTTGGT SLKDDIVRLY QPVHLLVGTP GRILDLTKKG VCVLKNCSML VMDEADKLLS PEFQPSIQEL IRYLPSNRQI
301: LMFSATFPVT VKEFKDKYLP KPYVINLMDE LTLKGITQFY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMLQDHR
401: NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPK SAETYLHRVG RSGRFGHLGL AVNLITYEDR FNLYRIEQEL GTEIKPIPPQ IDRAIYCQ

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.