Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45810.1 | CDY20530 | AT1G26110.1 | 21798944 |
| AT2G45810.1 | CDY36091 | AT1G26110.1 | 21798944 |
| AT2G45810.1 | CDY51127 | AT1G26110.1 | 21798944 |
| AT2G45810.1 | CDY55955 | AT1G26110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039312.1-P | Field mustard | cytosol | 99.8 | 98.45 |
| CDY27357 | Canola | cytosol, plastid | 96.67 | 96.86 |
| CDY45702 | Canola | cytosol | 38.04 | 94.17 |
| KRH04755 | Soybean | cytosol | 46.47 | 89.43 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 92.55 | 89.39 |
| CDY58787 | Canola | cytosol | 80.59 | 85.27 |
| CDY48935 | Canola | cytosol, plastid | 79.41 | 85.26 |
| CDY54061 | Canola | cytosol | 53.92 | 84.36 |
| CDX71756 | Canola | cytosol | 79.22 | 84.34 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 77.25 | 82.08 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 77.84 | 80.86 |
| GSMUA_Achr1P00220_001 | Banana | cytosol, mitochondrion | 77.65 | 80.49 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 53.33 | 80.0 |
| CDY51147 | Canola | cytosol | 77.65 | 79.84 |
| GSMUA_Achr2P10560_001 | Banana | cytosol | 75.88 | 79.63 |
| CDY07205 | Canola | cytosol | 76.47 | 79.43 |
| Solyc10g017530.2.1 | Tomato | nucleus | 76.27 | 79.23 |
| GSMUA_Achr5P12220_001 | Banana | cytosol | 76.27 | 79.06 |
| KRH48173 | Soybean | mitochondrion | 77.45 | 79.0 |
| KRH65096 | Soybean | nucleus | 77.25 | 78.96 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 77.65 | 78.88 |
| CDX91901 | Canola | cytosol | 77.45 | 78.84 |
| KRH48170 | Soybean | endoplasmic reticulum | 77.45 | 78.53 |
| CDX74342 | Canola | cytosol | 78.43 | 77.82 |
| Os04t0533000-02 | Rice | cytosol | 75.69 | 77.51 |
| Solyc01g094350.2.1 | Tomato | nucleus | 75.49 | 77.31 |
| Os02t0641800-02 | Rice | plasma membrane, plastid | 76.27 | 76.57 |
| TraesCS2B01G387200.1 | Wheat | cytosol | 74.51 | 76.15 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 74.51 | 75.85 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 74.9 | 75.2 |
| HORVU6Hr1G060630.1 | Barley | cytosol | 76.27 | 75.1 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 76.08 | 74.19 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 73.14 | 74.16 |
| EER91410 | Sorghum | cytosol | 73.33 | 73.77 |
| TraesCS6B01G265300.1 | Wheat | cytosol | 75.49 | 73.61 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 75.49 | 73.61 |
| Zm00001d051268_P004 | Maize | extracellular | 75.29 | 73.56 |
| EER91411 | Sorghum | cytosol | 72.94 | 73.37 |
| Zm00001d017384_P008 | Maize | cytosol | 75.1 | 72.95 |
| Os10t0503700-01 | Rice | plasma membrane | 74.31 | 72.74 |
| KRH40488 | Soybean | cytosol | 75.49 | 71.43 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 72.75 | 70.67 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 72.75 | 70.67 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 72.55 | 70.34 |
| GSMUA_Achr11P... | Banana | cytosol | 76.27 | 68.85 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 72.94 | 65.96 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 68.43 | 64.99 |
| CDY26130 | Canola | cytosol | 8.24 | 41.58 |
| CDY37498 | Canola | cytosol, mitochondrion | 7.45 | 41.3 |
| CDY67069 | Canola | cytosol | 7.65 | 38.61 |
| CDY10607 | Canola | cytosol | 29.41 | 36.5 |
| CDY32586 | Canola | cytosol | 26.86 | 36.24 |
| CDY08220 | Canola | cytosol | 29.22 | 36.16 |
| CDY02469 | Canola | cytosol | 29.22 | 36.16 |
| CDY39079 | Canola | cytosol | 29.22 | 36.16 |
| CDY24057 | Canola | cytosol | 29.02 | 35.92 |
| CDY33073 | Canola | cytosol | 28.43 | 35.19 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.41 | 35.13 |
| CDX97528 | Canola | cytosol | 29.22 | 35.06 |
| CDY55205 | Canola | cytosol | 29.02 | 34.99 |
| CDY22577 | Canola | cytosol | 10.2 | 34.9 |
| CDX82505 | Canola | cytosol | 29.02 | 34.58 |
| CDX75739 | Canola | cytosol | 29.02 | 33.95 |
| CDX82280 | Canola | cytosol | 27.06 | 33.82 |
| CDY72259 | Canola | cytosol | 14.71 | 33.78 |
| CDY42205 | Canola | cytosol | 26.86 | 33.58 |
| CDY22956 | Canola | cytosol | 26.86 | 33.58 |
| CDY51692 | Canola | cytosol | 26.86 | 33.58 |
| CDY24617 | Canola | cytosol | 26.86 | 33.58 |
| CDY33416 | Canola | cytosol | 26.86 | 33.58 |
| CDY51112 | Canola | cytosol | 28.24 | 32.73 |
| CDX85725 | Canola | cytosol | 28.24 | 32.58 |
| CDY58940 | Canola | cytosol | 25.49 | 32.18 |
| CDX70383 | Canola | cytosol | 28.04 | 31.99 |
| CDY03623 | Canola | cytosol | 25.29 | 31.93 |
| CDY11154 | Canola | cytosol | 12.55 | 31.68 |
| CDY71952 | Canola | cytosol | 24.9 | 30.46 |
| CDX85726 | Canola | cytosol | 28.04 | 29.18 |
| CDY51111 | Canola | cytosol | 14.12 | 28.92 |
| CDX69778 | Canola | cytosol | 28.04 | 28.89 |
| CDX78412 | Canola | cytosol | 28.04 | 28.77 |
| CDY56825 | Canola | cytosol | 12.75 | 28.51 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 28.04 | 27.34 |
| CDY54037 | Canola | cytosol | 14.12 | 26.97 |
| CDY53867 | Canola | cytosol | 21.96 | 26.54 |
| CDX67556 | Canola | cytosol | 24.12 | 26.06 |
| CDX76225 | Canola | cytosol | 25.29 | 26.01 |
| CDX95397 | Canola | cytosol | 25.1 | 25.91 |
| CDY13319 | Canola | cytosol | 24.31 | 25.31 |
| CDX72939 | Canola | mitochondrion, nucleus | 22.35 | 24.46 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 13.92 | 23.75 |
| CDY47205 | Canola | plastid | 20.0 | 21.34 |
| CDY02574 | Canola | plastid | 19.8 | 21.13 |
| CDY68148 | Canola | nucleus | 22.55 | 15.56 |
| CDY49860 | Canola | cytosol | 1.37 | 5.6 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078HGT4 | UniProt:A0A078HGT4 | EnsemblPlants:CDY37067 | ProteinID:CDY37067 |
| ProteinID:CDY37067.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00063276001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF555 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EE006D | SEG:seg | : | : | : | : |
Description
BnaA04g26450DBnaA04g26450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGT4]
Coordinates
chrLK032390:+:267122..270244
Molecular Weight (calculated)
58366.9 Da
IEP (calculated)
8.230
GRAVY (calculated)
-0.503
Length
510 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNNNNRGRF PPGIGAQNPN PNPNPPPQQF LHSRTPFPQQ YVQSRTPLPP QQQPDAQQYV QRGYSQQNPP QQIQQQQQWS TRAQLPGNPS YVDEVEKTVQ
101: SEANNDSNNQ DWKATLKLPP RDNRYQTEDV TATKGNEFED YFLKRDLLRG IYEKGFEKPS PIQEESIPIA LTGSDILARA KNGTGKTGAF CIPTLEKIDP
201: ENNVIQAVIL VPTRELALQT SQVCKELSKY LKIEVMVTTG GTSLRDDIMR LYQPVHLLVG TPGRILDLTK KGVCVLKDCA MLVMDEADKL LSAEFQPSIE
301: ELIQFLPQNR QILMFSATFP VTVKYFKDRY LRKPYIINLM DQLTLMGVTQ YYAFVEERQK VHCLNTLFSK LQINQSIIFC NSVNRVELLA KKITELGYSC
401: FYIHAKMAQD HRNRVFHDFR NGACRNLVCT DLFTRGIDIQ AVNVVINFDF PRTSESYLHR VGRSGRYGHL GLAVNLVTYE DRFKMYQTEQ ELGTEIKPIP
501: SLIDKAIYCQ
101: SEANNDSNNQ DWKATLKLPP RDNRYQTEDV TATKGNEFED YFLKRDLLRG IYEKGFEKPS PIQEESIPIA LTGSDILARA KNGTGKTGAF CIPTLEKIDP
201: ENNVIQAVIL VPTRELALQT SQVCKELSKY LKIEVMVTTG GTSLRDDIMR LYQPVHLLVG TPGRILDLTK KGVCVLKDCA MLVMDEADKL LSAEFQPSIE
301: ELIQFLPQNR QILMFSATFP VTVKYFKDRY LRKPYIINLM DQLTLMGVTQ YYAFVEERQK VHCLNTLFSK LQINQSIIFC NSVNRVELLA KKITELGYSC
401: FYIHAKMAQD HRNRVFHDFR NGACRNLVCT DLFTRGIDIQ AVNVVINFDF PRTSESYLHR VGRSGRYGHL GLAVNLVTYE DRFKMYQTEQ ELGTEIKPIP
501: SLIDKAIYCQ
001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
Arabidopsis Description
RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.