Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26130 | Canola | cytosol | 24.57 | 100.0 |
| Bra030893.1-P | Field mustard | cytosol | 99.76 | 99.51 |
| CDY02469 | Canola | cytosol | 99.51 | 99.27 |
| CDY37498 | Canola | cytosol, mitochondrion | 22.14 | 98.91 |
| CDY08220 | Canola | cytosol | 98.54 | 98.3 |
| CDY39079 | Canola | cytosol | 97.32 | 97.09 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 90.02 | 93.91 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 94.16 | 93.7 |
| PGSC0003DMT400021166 | Potato | cytosol | 94.16 | 93.7 |
| PGSC0003DMT400075339 | Potato | cytosol | 94.16 | 93.7 |
| CDY24057 | Canola | cytosol | 93.67 | 93.45 |
| Solyc12g095990.1.1 | Tomato | nucleus | 93.67 | 93.22 |
| PGSC0003DMT400075336 | Potato | cytosol | 92.94 | 93.17 |
| CDY33073 | Canola | cytosol | 93.19 | 92.96 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 92.46 | 92.01 |
| CDY32586 | Canola | cytosol | 84.18 | 91.53 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 91.97 | 91.53 |
| CDY67069 | Canola | cytosol | 21.9 | 89.11 |
| CDX82505 | Canola | cytosol | 92.7 | 89.02 |
| CDY55205 | Canola | cytosol | 91.24 | 88.65 |
| CDX97528 | Canola | cytosol | 91.48 | 88.47 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 91.73 | 88.29 |
| CDX75739 | Canola | cytosol | 92.94 | 87.61 |
| CDY72259 | Canola | cytosol | 46.96 | 86.94 |
| CDY11154 | Canola | cytosol | 38.44 | 78.22 |
| CDY54037 | Canola | cytosol | 42.09 | 64.79 |
| CDY53867 | Canola | cytosol | 65.69 | 63.98 |
| CDY33416 | Canola | cytosol | 60.1 | 60.54 |
| CDY42205 | Canola | cytosol | 60.1 | 60.54 |
| CDY24617 | Canola | cytosol | 60.1 | 60.54 |
| CDY51692 | Canola | cytosol | 60.1 | 60.54 |
| CDX82280 | Canola | cytosol | 60.1 | 60.54 |
| CDY22956 | Canola | cytosol | 59.85 | 60.29 |
| CDX72939 | Canola | mitochondrion, nucleus | 64.23 | 56.65 |
| CDY22577 | Canola | cytosol | 20.44 | 56.38 |
| CDY58940 | Canola | cytosol | 54.01 | 54.95 |
| CDY03623 | Canola | cytosol | 53.77 | 54.7 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 54.74 | 53.44 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 35.52 | 47.56 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 56.2 | 42.0 |
| CDY54061 | Canola | cytosol | 30.9 | 38.96 |
| CDY45702 | Canola | cytosol | 18.73 | 37.38 |
| CDY68148 | Canola | nucleus | 64.96 | 36.13 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 54.74 | 35.16 |
| CDX85725 | Canola | cytosol | 35.52 | 33.03 |
| CDY51112 | Canola | cytosol | 35.28 | 32.95 |
| CDX70383 | Canola | cytosol | 35.52 | 32.66 |
| CDY48935 | Canola | cytosol, plastid | 37.23 | 32.21 |
| CDX71756 | Canola | cytosol | 36.98 | 31.73 |
| CDY71952 | Canola | cytosol | 32.12 | 31.65 |
| CDY58787 | Canola | cytosol | 36.74 | 31.33 |
| CDY07205 | Canola | cytosol | 36.98 | 30.96 |
| CDY51147 | Canola | cytosol | 36.98 | 30.65 |
| CDX91901 | Canola | cytosol | 36.5 | 29.94 |
| CDX85726 | Canola | cytosol | 35.28 | 29.59 |
| CDY37067 | Canola | cytosol | 36.5 | 29.41 |
| CDX78412 | Canola | cytosol | 35.52 | 29.38 |
| CDX69778 | Canola | cytosol | 35.28 | 29.29 |
| CDY27357 | Canola | cytosol, plastid | 36.25 | 29.27 |
| CDX67556 | Canola | cytosol | 33.33 | 29.03 |
| CDX74342 | Canola | cytosol | 36.25 | 28.99 |
| CDY13319 | Canola | cytosol | 33.09 | 27.76 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 35.28 | 27.72 |
| OQU84655 | Sorghum | cytosol | 51.58 | 27.71 |
| CDY51111 | Canola | cytosol | 16.79 | 27.71 |
| CDX76225 | Canola | cytosol | 33.33 | 27.62 |
| CDX95397 | Canola | cytosol | 33.09 | 27.53 |
| Os02t0221300-01 | Rice | cytosol | 55.72 | 25.99 |
| CDY56825 | Canola | cytosol | 13.38 | 24.12 |
| Zm00001d016350_P001 | Maize | vacuole | 28.71 | 23.41 |
| CDY02574 | Canola | plastid | 27.01 | 23.22 |
| CDY47205 | Canola | plastid | 26.76 | 23.01 |
| Zm00001d016351_P002 | Maize | nucleus | 47.69 | 21.97 |
| KXG29825 | Sorghum | cytosol | 46.72 | 21.77 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.84 | 20.4 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 57.18 | 18.45 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 57.42 | 17.56 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 55.96 | 17.23 |
| CDY49860 | Canola | cytosol | 3.89 | 12.8 |
Protein Annotations
| MapMan:17.4.2.1 | Gene3D:3.40.50.300 | GO:A0A078FC93 | UniProt:A0A078FC93 | EnsemblPlants:CDY10607 | ProteinID:CDY10607 |
| ProteinID:CDY10607.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00032587001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF551 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EEB6F1 | : | : | : | : | : |
Description
BnaC03g70070DBnaC03g70070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FC93]
Coordinates
chrLK032004:-:823753..826328
Molecular Weight (calculated)
46582.0 Da
IEP (calculated)
5.352
GRAVY (calculated)
-0.225
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSAPEGTQ FDTRQFDQKL NEVQGQDEFF TSYDEVHESF DAMGLQENLL RGIYAYGFEK PSAIQQRGIV PFCNGLDVIQ QAQSGTGKTA TFCSGVLQQL
101: DFTLVQCQAL VLAPTRELAQ QIEKVMRALG DYLGVKVHAC VGGTSVREDQ RILQAGVHVV VGTPGRVFDM LRRQSLRADS IKMFVLDEAD EMLSRGFKDQ
201: IYDIFQLLPP KIQVGVFSAT MPPEALEITR KFMSKPVRIL VKRDELTLEG IKQFYVNVEK EDWKLETLCD LYETLAITQS VIFVNTRRKV DWLTDKMRSR
301: DHTVSATHGD MDQNTRDIIM REFRSGSSRV LITTDLLARG IDVQQVSLVI NFDLPTQPEN YLHRIGRSGR FGRKGVAINF VTKDDERMLF DIQKFYNVVV
401: EELPSNVADL L
101: DFTLVQCQAL VLAPTRELAQ QIEKVMRALG DYLGVKVHAC VGGTSVREDQ RILQAGVHVV VGTPGRVFDM LRRQSLRADS IKMFVLDEAD EMLSRGFKDQ
201: IYDIFQLLPP KIQVGVFSAT MPPEALEITR KFMSKPVRIL VKRDELTLEG IKQFYVNVEK EDWKLETLCD LYETLAITQS VIFVNTRRKV DWLTDKMRSR
301: DHTVSATHGD MDQNTRDIIM REFRSGSSRV LITTDLLARG IDVQQVSLVI NFDLPTQPEN YLHRIGRSGR FGRKGVAINF VTKDDERMLF DIQKFYNVVV
401: EELPSNVADL L
001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.