Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37498 | Canola | cytosol, mitochondrion | 90.1 | 98.91 |
| Bra030892.1-P | Field mustard | cytosol | 62.38 | 92.65 |
| CDY22577 | Canola | cytosol | 37.62 | 25.5 |
| CDY32586 | Canola | cytosol | 93.07 | 24.87 |
| CDY10607 | Canola | cytosol | 100.0 | 24.57 |
| CDY08220 | Canola | cytosol | 100.0 | 24.51 |
| CDY02469 | Canola | cytosol | 100.0 | 24.51 |
| CDY39079 | Canola | cytosol | 99.01 | 24.27 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 97.03 | 22.95 |
| CDY24057 | Canola | cytosol | 93.07 | 22.82 |
| CDY33073 | Canola | cytosol | 93.07 | 22.82 |
| CDY45702 | Canola | cytosol | 42.57 | 20.87 |
| CDX82505 | Canola | cytosol | 80.2 | 18.93 |
| CDY55205 | Canola | cytosol | 79.21 | 18.91 |
| CDX97528 | Canola | cytosol | 79.21 | 18.82 |
| CDX75739 | Canola | cytosol | 81.19 | 18.81 |
| CDY24617 | Canola | cytosol | 68.32 | 16.91 |
| CDY22956 | Canola | cytosol | 68.32 | 16.91 |
| CDY33416 | Canola | cytosol | 68.32 | 16.91 |
| CDY51692 | Canola | cytosol | 68.32 | 16.91 |
| CDY42205 | Canola | cytosol | 68.32 | 16.91 |
| CDX82280 | Canola | cytosol | 68.32 | 16.91 |
| CDY51111 | Canola | cytosol | 41.58 | 16.87 |
| CDY56825 | Canola | cytosol | 35.64 | 15.79 |
| CDY58940 | Canola | cytosol | 57.43 | 14.36 |
| CDY03623 | Canola | cytosol | 56.44 | 14.11 |
| CDY54061 | Canola | cytosol | 40.59 | 12.58 |
| CDY49860 | Canola | cytosol | 12.87 | 10.4 |
| CDY71952 | Canola | cytosol | 41.58 | 10.07 |
| CDY51112 | Canola | cytosol | 41.58 | 9.55 |
| CDX67556 | Canola | cytosol | 44.55 | 9.53 |
| CDX85725 | Canola | cytosol | 41.58 | 9.5 |
| CDY48935 | Canola | cytosol, plastid | 44.55 | 9.47 |
| CDX70383 | Canola | cytosol | 41.58 | 9.4 |
| CDX71756 | Canola | cytosol | 44.55 | 9.39 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 27.72 | 9.36 |
| CDY58787 | Canola | cytosol | 43.56 | 9.13 |
| CDY13319 | Canola | cytosol | 43.56 | 8.98 |
| CDX95397 | Canola | cytosol | 43.56 | 8.91 |
| CDX76225 | Canola | cytosol | 43.56 | 8.87 |
| CDY07205 | Canola | cytosol | 42.57 | 8.76 |
| CDY51147 | Canola | cytosol | 42.57 | 8.67 |
| CDX91901 | Canola | cytosol | 42.57 | 8.58 |
| CDX85726 | Canola | cytosol | 41.58 | 8.57 |
| CDX69778 | Canola | cytosol | 41.58 | 8.48 |
| CDX78412 | Canola | cytosol | 41.58 | 8.45 |
| CDX74342 | Canola | cytosol | 42.57 | 8.37 |
| CDY27357 | Canola | cytosol, plastid | 41.58 | 8.25 |
| CDY37067 | Canola | cytosol | 41.58 | 8.24 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 41.58 | 8.03 |
| CDY02574 | Canola | plastid | 34.65 | 7.32 |
| CDY47205 | Canola | plastid | 34.65 | 7.32 |
| CDX72939 | Canola | mitochondrion, nucleus | 15.84 | 3.43 |
| CDY53867 | Canola | cytosol | 13.86 | 3.32 |
| CDY72259 | Canola | cytosol | 4.95 | 2.25 |
| CDY68148 | Canola | nucleus | 15.84 | 2.17 |
| CDY54037 | Canola | cytosol | 2.97 | 1.12 |
| CDY11154 | Canola | cytosol | 0.99 | 0.5 |
| CDY67069 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY26130 | EnsemblPlantsGene:GSBRNA2T00034773001 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF551 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:CDY26130 | ProteinID:CDY26130.1 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EE6DAC | UniProt:A0A078GI54 | MapMan:35.1 | : |
Description
BnaC06g10660DBnaC06g10660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI54]
Coordinates
chrLK032185:-:464941..465246
Molecular Weight (calculated)
11615.0 Da
IEP (calculated)
5.860
GRAVY (calculated)
-0.214
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQNTRDIIM REFRSGSSRV LITTDLLARG IDVQQVSLVI NFDLPTQPEN YLHRIGRSGR FGRKGVAINF VTKDDERMLF DIQKFYNVVV EELPSNVADL
101: L
101: L
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.