Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97528 | Canola | cytosol | 97.16 | 96.71 |
| AT3G13920.5 | Thale cress | cytosol | 92.67 | 93.56 |
| CDX82505 | Canola | cytosol | 93.38 | 92.29 |
| CDY39079 | Canola | cytosol | 89.83 | 92.23 |
| CDX75739 | Canola | cytosol | 94.56 | 91.74 |
| CDY08220 | Canola | cytosol | 89.13 | 91.5 |
| Solyc12g095990.1.1 | Tomato | nucleus | 89.13 | 91.28 |
| CDY10607 | Canola | cytosol | 88.65 | 91.24 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 84.87 | 91.12 |
| PGSC0003DMT400075339 | Potato | cytosol | 88.89 | 91.04 |
| CDY02469 | Canola | cytosol | 88.65 | 91.02 |
| PGSC0003DMT400021166 | Potato | cytosol | 88.42 | 90.56 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 88.42 | 90.56 |
| PGSC0003DMT400075336 | Potato | cytosol | 87.71 | 90.49 |
| CDY72259 | Canola | cytosol | 47.28 | 90.09 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 87.23 | 89.35 |
| CDY24057 | Canola | cytosol | 87.0 | 89.32 |
| CDY67069 | Canola | cytosol | 21.28 | 89.11 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 87.0 | 89.1 |
| CDY33073 | Canola | cytosol | 86.52 | 88.83 |
| CDY32586 | Canola | cytosol | 78.49 | 87.83 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 84.87 | 84.07 |
| CDY26130 | Canola | cytosol | 18.91 | 79.21 |
| CDY37498 | Canola | cytosol, mitochondrion | 17.02 | 78.26 |
| CDY11154 | Canola | cytosol | 37.35 | 78.22 |
| CDY54037 | Canola | cytosol | 41.61 | 65.92 |
| CDY53867 | Canola | cytosol | 64.3 | 64.45 |
| CDY51692 | Canola | cytosol | 57.21 | 59.31 |
| CDY33416 | Canola | cytosol | 57.21 | 59.31 |
| CDX82280 | Canola | cytosol | 57.21 | 59.31 |
| CDY24617 | Canola | cytosol | 57.21 | 59.31 |
| CDY42205 | Canola | cytosol | 57.21 | 59.31 |
| CDY22956 | Canola | cytosol | 56.97 | 59.07 |
| CDX72939 | Canola | mitochondrion, nucleus | 63.36 | 57.51 |
| CDY22577 | Canola | cytosol | 20.09 | 57.05 |
| CDY58940 | Canola | cytosol | 51.77 | 54.21 |
| CDY03623 | Canola | cytosol | 51.54 | 53.96 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 51.54 | 51.78 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 35.46 | 48.86 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 52.72 | 40.55 |
| CDY54061 | Canola | cytosol | 30.02 | 38.96 |
| CDY45702 | Canola | cytosol | 17.97 | 36.89 |
| CDY68148 | Canola | nucleus | 64.07 | 36.67 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 50.83 | 33.59 |
| CDY51112 | Canola | cytosol | 33.81 | 32.5 |
| CDX85725 | Canola | cytosol | 33.81 | 32.35 |
| CDX70383 | Canola | cytosol | 33.81 | 31.99 |
| CDY48935 | Canola | cytosol, plastid | 35.46 | 31.58 |
| CDY71952 | Canola | cytosol | 30.73 | 31.18 |
| CDY58787 | Canola | cytosol | 35.46 | 31.12 |
| CDX71756 | Canola | cytosol | 35.22 | 31.11 |
| CDY07205 | Canola | cytosol | 35.46 | 30.55 |
| CDY51147 | Canola | cytosol | 35.46 | 30.24 |
| CDX91901 | Canola | cytosol | 34.99 | 29.54 |
| CDX67556 | Canola | cytosol | 32.86 | 29.45 |
| CDX69778 | Canola | cytosol | 34.04 | 29.09 |
| CDY37067 | Canola | cytosol | 34.99 | 29.02 |
| CDX85726 | Canola | cytosol | 33.57 | 28.98 |
| CDY27357 | Canola | cytosol, plastid | 34.75 | 28.88 |
| CDX78412 | Canola | cytosol | 33.81 | 28.77 |
| CDX74342 | Canola | cytosol | 34.75 | 28.6 |
| CDX76225 | Canola | cytosol | 32.86 | 28.02 |
| CDY13319 | Canola | cytosol | 32.39 | 27.96 |
| CDX95397 | Canola | cytosol | 32.62 | 27.94 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 34.04 | 27.53 |
| OQU84655 | Sorghum | cytosol | 48.23 | 26.67 |
| CDY51111 | Canola | cytosol | 15.37 | 26.1 |
| CDY56825 | Canola | cytosol | 13.71 | 25.44 |
| Os02t0221300-01 | Rice | cytosol | 51.54 | 24.74 |
| Zm00001d016350_P001 | Maize | vacuole | 29.08 | 24.4 |
| CDY02574 | Canola | plastid | 25.53 | 22.59 |
| CDY47205 | Canola | plastid | 25.3 | 22.38 |
| Zm00001d016351_P002 | Maize | nucleus | 46.57 | 22.09 |
| KXG29825 | Sorghum | cytosol | 44.44 | 21.32 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.42 | 20.4 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 53.66 | 17.82 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 54.14 | 17.04 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 52.48 | 16.63 |
| CDY49860 | Canola | cytosol | 3.55 | 12.0 |
Protein Annotations
| MapMan:17.4.2.1 | Gene3D:3.40.50.300 | GO:A0A078IY10 | UniProt:A0A078IY10 | EnsemblPlants:CDY55205 | ProteinID:CDY55205 |
| ProteinID:CDY55205.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00016508001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF551 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EF3319 | : | : | : | : | : |
Description
BnaCnng28430DBnaCnng28430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IY10]
Coordinates
chrLK033383:-:12022..14437
Molecular Weight (calculated)
48064.1 Da
IEP (calculated)
6.854
GRAVY (calculated)
-0.234
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDESHDS FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYSLVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD YIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRG
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INYDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTKDDERML CLRTLLICCE
401: GEKLWHCLPE KKGFYLFVKA RTL
101: LDYSLVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD YIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRG
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INYDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTKDDERML CLRTLLICCE
401: GEKLWHCLPE KKGFYLFVKA RTL
001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML CLRTWPICCE
401: GRKEVGSVAV FALPY
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML CLRTWPICCE
401: GRKEVGSVAV FALPY
Arabidopsis Description
EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.