Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72730.1 | CDY02774 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | CDY32742 | AT5G57870.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008045.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 100.0 | 100.0 |
| CDY26130 | Canola | cytosol | 22.95 | 97.03 |
| AT1G72730.1 | Thale cress | cytosol | 92.97 | 95.89 |
| CDY37498 | Canola | cytosol, mitochondrion | 20.61 | 95.65 |
| CDY02469 | Canola | cytosol | 88.52 | 91.75 |
| CDY10607 | Canola | cytosol | 88.29 | 91.73 |
| CDY08220 | Canola | cytosol | 88.29 | 91.5 |
| CDY67069 | Canola | cytosol | 21.55 | 91.09 |
| CDY39079 | Canola | cytosol | 87.59 | 90.78 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 87.35 | 90.31 |
| CDY11154 | Canola | cytosol | 42.39 | 89.6 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 86.65 | 89.59 |
| CDY32586 | Canola | cytosol | 78.45 | 88.62 |
| CDY24057 | Canola | cytosol | 85.48 | 88.59 |
| CDY33073 | Canola | cytosol | 84.78 | 87.86 |
| Solyc07g040750.1.1 | Tomato | cytosol | 84.31 | 87.17 |
| CDY55205 | Canola | cytosol | 84.07 | 84.87 |
| CDX82505 | Canola | cytosol | 84.78 | 84.58 |
| CDX97528 | Canola | cytosol | 83.84 | 84.24 |
| CDX75739 | Canola | cytosol | 84.31 | 82.57 |
| CDY72259 | Canola | cytosol | 42.86 | 82.43 |
| CDY54037 | Canola | cytosol | 45.2 | 72.28 |
| CDY53867 | Canola | cytosol | 70.73 | 71.56 |
| CDX72939 | Canola | mitochondrion, nucleus | 68.38 | 62.66 |
| CDY22956 | Canola | cytosol | 57.61 | 60.29 |
| CDX82280 | Canola | cytosol | 57.38 | 60.05 |
| CDY51692 | Canola | cytosol | 57.38 | 60.05 |
| CDY24617 | Canola | cytosol | 57.38 | 60.05 |
| CDY33416 | Canola | cytosol | 57.38 | 60.05 |
| CDY42205 | Canola | cytosol | 57.14 | 59.8 |
| CDY22577 | Canola | cytosol | 19.91 | 57.05 |
| CDY58940 | Canola | cytosol | 51.99 | 54.95 |
| CDY03623 | Canola | cytosol | 51.76 | 54.7 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 52.22 | 52.97 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 34.66 | 48.21 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 53.86 | 41.82 |
| CDY68148 | Canola | nucleus | 70.02 | 40.46 |
| CDY54061 | Canola | cytosol | 29.74 | 38.96 |
| CDY45702 | Canola | cytosol | 17.8 | 36.89 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 52.69 | 35.16 |
| CDX85725 | Canola | cytosol | 34.19 | 33.03 |
| CDY51112 | Canola | cytosol | 33.96 | 32.95 |
| CDX70383 | Canola | cytosol | 34.19 | 32.66 |
| CDY48935 | Canola | cytosol, plastid | 35.83 | 32.21 |
| CDX71756 | Canola | cytosol | 35.83 | 31.94 |
| CDY58787 | Canola | cytosol | 35.36 | 31.33 |
| CDY71952 | Canola | cytosol | 30.45 | 31.18 |
| CDY07205 | Canola | cytosol | 35.6 | 30.96 |
| CDY51147 | Canola | cytosol | 35.6 | 30.65 |
| CDX91901 | Canola | cytosol | 35.13 | 29.94 |
| CDX85726 | Canola | cytosol | 33.96 | 29.59 |
| CDY37067 | Canola | cytosol | 35.13 | 29.41 |
| CDX78412 | Canola | cytosol | 34.19 | 29.38 |
| CDX69778 | Canola | cytosol | 33.96 | 29.29 |
| CDY27357 | Canola | cytosol, plastid | 34.89 | 29.27 |
| CDX67556 | Canola | cytosol | 32.08 | 29.03 |
| CDX74342 | Canola | cytosol | 34.89 | 28.99 |
| CDX76225 | Canola | cytosol | 32.79 | 28.23 |
| CDX95397 | Canola | cytosol | 32.55 | 28.14 |
| CDY13319 | Canola | cytosol | 32.08 | 27.96 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 33.96 | 27.72 |
| CDY51111 | Canola | cytosol | 16.16 | 27.71 |
| OQU84655 | Sorghum | cytosol | 48.01 | 26.8 |
| Os02t0221300-01 | Rice | cytosol | 52.22 | 25.31 |
| CDY56825 | Canola | cytosol | 12.41 | 23.25 |
| Zm00001d016350_P001 | Maize | vacuole | 27.17 | 23.02 |
| CDY02574 | Canola | plastid | 25.06 | 22.38 |
| CDY47205 | Canola | plastid | 24.82 | 22.18 |
| Zm00001d016351_P002 | Maize | nucleus | 45.2 | 21.64 |
| KXG29825 | Sorghum | cytosol | 43.79 | 21.2 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.52 | 20.74 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 54.8 | 18.37 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 55.04 | 17.49 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 53.63 | 17.15 |
| CDY49860 | Canola | cytosol | 3.75 | 12.8 |
Protein Annotations
| MapMan:17.4.2.1 | Gene3D:3.40.50.300 | GO:A0A078IIS5 | UniProt:A0A078IIS5 | EnsemblPlants:CDY49861 | ProteinID:CDY49861 |
| ProteinID:CDY49861.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005829 | GO:GO:0009505 |
| GO:GO:0016020 | GO:GO:0016787 | GO:GO:0030312 | EnsemblPlantsGene:GSBRNA2T00093940001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF551 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | SignalP:SignalP-noTM |
| UniParc:UPI00025471BD | SEG:seg | : | : | : | : |
Description
BnaA02g16100DEukaryotic initiation factor 4A-3 [Source:Projected from Arabidopsis thaliana (AT1G72730) UniProtKB/Swiss-Prot;Acc:Q9CAI7]
Coordinates
chrLK032864:-:91988..94538
Molecular Weight (calculated)
48507.5 Da
IEP (calculated)
5.110
GRAVY (calculated)
-0.178
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFWFVFMYI SPVMAGMASE GTQYDPRQFD SKMNAILGEE GEETFYTTYD EVCDSFDAME LKSDLLRGIY AYGFEKPSAI QQRGIIPFCK GLDVIQQAQS
101: GTGKTATFCS GVLQQLDYTL VQCQALVLAP TRELAQQIEK VMRALGDYLG VKVHACVGGT SVREDQRILQ SGVHVVVGTP GRVFDMLRRQ SLRADAMKMF
201: VLDEADEMLS RGFKDQIYDI FQLLPSKVQV GVFSATMPPE ALEITRKFMN KPVRILVKRD ELTLEGIKQF YVNVDKEEWK LETLCDLYET LAITQSVIFV
301: NTRRKVDWLT DKMRSRDHTV SATHGDMDQN TRDIIMREFR SGSSRVLITT DLLARGIDVQ QVSLVINFDL PTQPENYLHR IGRSGRFGRK GVAINFMTTD
401: DERMLSDIQK FYNVVVEELP SNVADLL
101: GTGKTATFCS GVLQQLDYTL VQCQALVLAP TRELAQQIEK VMRALGDYLG VKVHACVGGT SVREDQRILQ SGVHVVVGTP GRVFDMLRRQ SLRADAMKMF
201: VLDEADEMLS RGFKDQIYDI FQLLPSKVQV GVFSATMPPE ALEITRKFMN KPVRILVKRD ELTLEGIKQF YVNVDKEEWK LETLCDLYET LAITQSVIFV
301: NTRRKVDWLT DKMRSRDHTV SATHGDMDQN TRDIIMREFR SGSSRVLITT DLLARGIDVQ QVSLVINFDL PTQPENYLHR IGRSGRFGRK GVAINFMTTD
401: DERMLSDIQK FYNVVVEELP SNVADLL
001: MAGMASDGTQ YDPRQFDTKM NAILGEEGEE TFYTNYDEVC DSFDAMELQP DLLRGIYAYG FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
Arabidopsis Description
TIF4A-3Eukaryotic initiation factor 4A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.