Factsheet for Solyc07g040750.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g005780.1.1
Solyc07g005810.2.1
Solyc12g009960.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72730.1	Solyc07g005780.1.1	AT5G57870.1	21798944
AT1G72730.1	Solyc07g005810.2.1	AT5G57870.1	21798944
AT1G72730.1	Solyc12g009960.1.1	AT5G57870.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	85.96	90.1
Solyc12g095990.1.1	Tomato	nucleus	90.07	90.07
Solyc08g062800.2.1	Tomato	extracellular, plastid	89.83	89.83
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	88.14	88.14
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	87.41	87.41
KRH52210	Soybean	cytosol, endoplasmic reticulum	87.41	87.41
VIT_04s0008g00980.t01	Wine grape	cytosol	17.43	85.71
AT1G72730.1	Thale cress	cytosol	85.23	85.02
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.17	84.31
CDY49861	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.17	84.31
CDY67069	Canola	cytosol	20.34	83.17
VIT_04s0008g00990.t01	Wine grape	cytosol	24.46	82.11
CDY11154	Canola	cytosol	36.8	75.25
CDY54037	Canola	cytosol	42.13	65.17
CDY53867	Canola	cytosol	64.16	62.8
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	59.32	62.66
CDX72939	Canola	mitochondrion, nucleus	62.47	55.36
TraesCS6B01G217800.1	Wheat	cytosol	55.21	54.16
Bra016037.1-P	Field mustard	cytosol	86.68	49.24
GSMUA_Achr9P13950_001	Banana	mitochondrion	35.11	47.23
TraesCS6A01G186600.1	Wheat	cytosol	57.63	43.27
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	55.93	36.09
CDY68148	Canola	nucleus	62.95	35.18
Solyc06g066060.2.1	Tomato	nucleus	34.87	35.12
Solyc10g017530.2.1	Tomato	nucleus	36.8	30.96
Solyc01g094350.2.1	Tomato	nucleus	36.32	30.12
Solyc08g061000.2.1	Tomato	nucleus	35.11	29.9
Solyc05g048850.2.1	Tomato	mitochondrion	36.56	28.12
OQU84655	Sorghum	cytosol	50.85	27.45
Solyc04g082790.2.1	Tomato	plastid	32.93	27.25
Solyc10g085790.1.1	Tomato	nucleus	32.93	26.77
Os02t0221300-01	Rice	cytosol	56.42	26.45
Zm00001d016350_P001	Maize	vacuole	29.06	23.81
Zm00001d016351_P002	Maize	nucleus	48.67	22.53
KXG29825	Sorghum	cytosol	46.73	21.88
Solyc01g079800.2.1	Tomato	plastid	23.73	21.35
Solyc08g080550.1.1	Tomato	nucleus	26.15	19.71
TraesCS6A01G186800.1	Wheat	cytosol	58.6	19.0
TraesCS6D01G173700.3	Wheat	cytosol	58.84	18.08
TraesCS6B01G217700.1	Wheat	cytosol	57.63	17.83
CDY49860	Canola	cytosol	3.63	12.0

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005829	GO:GO:0006139	GO:GO:0006412	GO:GO:0006413
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009505	GO:GO:0009987	GO:GO:0010468
GO:GO:0010501	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	GO:GO:0030312	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4CDV2	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF294	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc07g040750.1	EnsemblPlants:Solyc07g040750.1.1	UniParc:UPI000276B624	:	:

Description

No Description!

Coordinates

chr7:-:49533984..49536184

Molecular Weight (calculated)

46662.2 Da

IEP (calculated)

5.017

GRAVY (calculated)

-0.192

Length

413 amino acids

Sequence
(BLAST)

001: MAGAAPDGSQ FDARQFDSKM TELLNAEGQE FFTSYDEAYD TFDAMELKED LLKGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQSQSGTGK TATFCSGVLQ
101: QLDYELLGCQ ALVLAPTREL AQQIEKVMEA LGQCLKVKVH ACVGGTSVRE DQRILSIGVH VVVGTPGRVF DMLRRQSLRA DHIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PPKIQVGVFS ATMPPEALEI TRKFMNKPVR ILVKRDELTL EGIKQFYVNV EKEEWKFDTL CDLYETLAIT QSVIFVNTRR KVDLLTEQMQ
301: SKDHTVSATH GDMDHKTRDV IMHEFRSGSS RVLITTDLLA RGIDVQQVSL VINYDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTMDDERM LSDIQSFYNM
401: VIEELPANVA DLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.