Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54037 | Canola | cytosol | 70.24 | 22.1 |
| Solyc07g040750.1.1 | Tomato | cytosol | 85.71 | 17.43 |
| VIT_04s0008g01000.t01 | Wine grape | cytosol, extracellular | 84.52 | 17.19 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 84.52 | 17.19 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 84.52 | 17.19 |
| VIT_11s0016g01920.t01 | Wine grape | cytosol | 83.33 | 16.95 |
| CDY53867 | Canola | cytosol | 82.14 | 16.35 |
| VIT_09s0002g01760.t01 | Wine grape | cytosol | 84.52 | 16.28 |
| CDX72939 | Canola | mitochondrion, nucleus | 80.95 | 14.59 |
| VIT_06s0080g00550.t01 | Wine grape | cytosol | 67.86 | 13.73 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 46.43 | 12.7 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 51.19 | 10.21 |
| VIT_00s2262g00010.t01 | Wine grape | cytosol | 27.38 | 9.43 |
| CDY68148 | Canola | nucleus | 80.95 | 9.2 |
| Zm00001d016350_P001 | Maize | vacuole | 52.38 | 8.73 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 53.57 | 8.18 |
| CDY11154 | Canola | cytosol | 19.05 | 7.92 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 39.29 | 7.71 |
| VIT_08s0007g04430.t01 | Wine grape | cytosol | 27.38 | 7.4 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 39.29 | 7.22 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 51.19 | 6.72 |
| VIT_15s0046g03200.t01 | Wine grape | cytosol | 36.9 | 6.31 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 35.71 | 6.25 |
| OQU84655 | Sorghum | cytosol | 52.38 | 5.75 |
| Os02t0221300-01 | Rice | cytosol | 59.52 | 5.68 |
| VIT_08s0007g04400.t01 | Wine grape | cytosol | 34.52 | 5.65 |
| Zm00001d016351_P002 | Maize | nucleus | 48.81 | 4.6 |
| KXG29825 | Sorghum | cytosol | 47.62 | 4.54 |
| VIT_02s0025g04190.t01 | Wine grape | endoplasmic reticulum, vacuole | 27.38 | 4.13 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 57.14 | 3.57 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 53.57 | 3.53 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 54.76 | 3.45 |
| VIT_05s0020g02870.t01 | Wine grape | extracellular | 16.67 | 2.88 |
| CDY67069 | Canola | cytosol | 1.19 | 0.99 |
| CDY49860 | Canola | cytosol | 1.19 | 0.8 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | ProteinID:CCB46554 | ProteinID:CCB46554.1 | InterPro:DEAD/DEAH_box_helicase_dom | UniProt:F6H398 |
| EMBL:FN595231 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | ScanProsite:PS00039 | PFscan:PS51192 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF365 | InterPro:RNA-helicase_DEAD-box_CS | SUPFAM:SSF52540 | UniParc:UPI000210922A | ArrayExpress:VIT_04s0008g00980 |
| EnsemblPlantsGene:VIT_04s0008g00980 | EnsemblPlants:VIT_04s0008g00980.t01 | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:855317..855694
Molecular Weight (calculated)
9969.3 Da
IEP (calculated)
5.169
GRAVY (calculated)
-0.189
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MFVLDEADEM LSRGFKDQIY EIFQLLPERI QVGVFSATMP PEVLEITKKF MNKPVRILVK REELTLEGIR QFHVNVEREV RNTM
001: MAGMASDGTQ YDPRQFDTKM NAILGEEGEE TFYTNYDEVC DSFDAMELQP DLLRGIYAYG FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL
Arabidopsis Description
TIF4A-3Eukaryotic initiation factor 4A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.