Factsheet for VIT_09s0002g01760.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g01920.t01	Wine grape	cytosol	90.6	95.64
GSMUA_Achr8P24670_001	Banana	cytosol	82.11	95.21
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	90.14	95.16
GSMUA_Achr2P19480_001	Banana	cytosol	80.5	94.86
TraesCS6B01G144100.1	Wheat	cytosol	41.51	94.76
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	89.22	94.19
GSMUA_AchrUn_...	Banana	cytosol	79.82	94.05
PGSC0003DMT400012518	Potato	cytosol	88.76	93.7
KRH10048	Soybean	cytosol, endoplasmic reticulum	88.76	93.7
KRH23270	Soybean	cytosol	88.76	93.7
EES04512	Sorghum	cytosol	87.84	93.41
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	88.3	93.22
Zm00001d015251_P001	Maize	extracellular	87.61	93.17
Os06t0701100-02	Rice	extracellular, nucleus, plastid	88.3	93.0
Zm00001d036480_P001	Maize	plasma membrane, plastid	88.3	93.0
KRH47074	Soybean	nucleus	88.07	92.98
Zm00001d014673_P001	Maize	plastid	88.07	92.75
Os02t0146600-01	Rice	plastid	87.84	92.51
TraesCS7D01G412200.1	Wheat	golgi, nucleus	87.84	92.51
TraesCS7B01G320000.1	Wheat	cytosol	87.61	92.27
TraesCS7A01G419400.1	Wheat	cytosol	87.61	92.27
GSMUA_Achr10P...	Banana	cytosol	80.73	91.91
KRH44102	Soybean	nucleus	88.3	91.45
GSMUA_Achr7P19690_001	Banana	cytosol	73.85	91.22
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	88.07	86.88
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	88.07	86.88
VIT_04s0008g00990.t01	Wine grape	cytosol	24.08	85.37
VIT_04s0008g00980.t01	Wine grape	cytosol	16.28	84.52
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	80.96	80.78
HORVU6Hr1G020910.1	Barley	cytosol	89.45	77.23
OQU76995	Sorghum	cytosol	89.22	75.24
TraesCS6B01G144000.1	Wheat	golgi	88.99	70.42
VIT_06s0080g00550.t01	Wine grape	cytosol	58.49	61.45
VIT_09s0002g06660.t01	Wine grape	cytosol	33.49	34.11
VIT_00s2262g00010.t01	Wine grape	cytosol	18.12	32.38
VIT_04s0008g05330.t01	Wine grape	cytosol	33.26	31.73
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	33.72	30.62
VIT_15s0046g03200.t01	Wine grape	cytosol	33.95	30.14
VIT_08s0007g04400.t01	Wine grape	cytosol	32.57	27.68
VIT_08s0007g04430.t01	Wine grape	cytosol	18.81	26.37
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	28.21	22.08
VIT_05s0020g02870.t01	Wine grape	extracellular	23.62	21.19

Protein Annotations

EntrezGene:100261822	wikigene:100261822	MapMan:17.4.2.1	Gene3D:3.40.50.300	ProteinID:CCB59318	ProteinID:CCB59318.1
InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HXZ5	EMBL:FN596494	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006413	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010468	GO:GO:0010501	GO:GO:0016787	GO:GO:0019538	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100261822	wikigene:LOC100261822	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TIGR:TC52069	UniParc:UPI0002109CA0	ArrayExpress:VIT_09s0002g01760	EnsemblPlantsGene:VIT_09s0002g01760	EnsemblPlants:VIT_09s0002g01760.t01
unigene:Vvi.9156	RefSeq:XP_002277703	RefSeq:XP_002277703.1	:	:	:

Description

No Description!

Coordinates

chr9:-:1575152..1580947

Molecular Weight (calculated)

49609.6 Da

IEP (calculated)

5.680

GRAVY (calculated)

-0.233

Length

436 amino acids

Sequence
(BLAST)

001: MEHALHFPNP LFFSQLHGAD PRIMAGQAPE GSQFDARQFD SKMNDLLSAD GEDFFTSYDE VYDTFDSMGL VENLLRGIYA YGFEKPSAIQ QRGIVPFCKG
101: LDVIQQAQSG TGKTATFCSG ILQQLDYSLV QCQALVLAPT RELAQQIEKV MRALGDYLGV RVHACVGGTS VREDQRILQT GVHVVVGTPG RVFDMLRRQS
201: LRPDYIKMFV LDEADEMLSR GFKDQIYDIF QLLPSKVQVG VFSATMPPEA LEITRKFMNK PVRILVKRDE LTLEGIKQFH VNVDKEEWKL ETLCDLYETL
301: AITQSVIFVN TRRKVDWLTD KMRSRDHTVS ATHGDMDQNT RDIIMREFRS GSSRVLITTD LLARGIDVQQ VSLVINYDLP TQPENYLHRI GRSGRFGRKG
401: VAINFVTRDD ERMLFDIQRF YNVVIEELPS NVADLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.