Factsheet for GSMUA_Achr5P06410_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
vacuole 1
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	83.52	98.65
GSMUA_Achr2P19480_001	Banana	cytosol	82.84	97.84
GSMUA_Achr8P24670_001	Banana	cytosol	81.01	94.15
GSMUA_Achr7P19690_001	Banana	cytosol	75.06	92.92
GSMUA_Achr10P...	Banana	cytosol	79.86	91.12
VIT_11s0016g01920.t01	Wine grape	cytosol	81.46	86.2
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	81.46	86.2
KRH37426	Soybean	cytosol, endoplasmic reticulum	80.78	85.47
KRH12430	Soybean	cytosol	80.55	85.23
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	80.55	85.23
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	79.86	84.5
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	79.63	84.26
KRH23270	Soybean	cytosol	79.41	84.02
KRH10048	Soybean	cytosol, endoplasmic reticulum	79.41	84.02
KRH47074	Soybean	nucleus	79.18	83.78
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	78.26	82.81
KRH44102	Soybean	nucleus	79.63	82.66
PGSC0003DMT400012518	Potato	cytosol	77.8	82.32
VIT_09s0002g01760.t01	Wine grape	cytosol	80.78	80.96
GSMUA_Achr9P23810_001	Banana	cytosol	49.43	55.67
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	27.23	51.97
GSMUA_Achr3P27120_001	Banana	cytosol	35.01	45.95
GSMUA_Achr9P13950_001	Banana	mitochondrion	29.75	42.35
GSMUA_Achr8P05380_001	Banana	cytosol	30.43	28.73
GSMUA_Achr5P12220_001	Banana	cytosol	31.12	27.64
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	30.89	27.44
GSMUA_Achr2P10560_001	Banana	cytosol	30.43	27.37
GSMUA_Achr10P...	Banana	nucleus	29.75	26.97
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	28.6	25.1
GSMUA_Achr6P14220_001	Banana	cytosol	29.75	24.86
GSMUA_Achr11P...	Banana	cytosol	30.43	23.54
GSMUA_Achr6P27990_001	Banana	plastid	20.82	18.76
GSMUA_Achr1P01890_001	Banana	plastid	21.97	18.15

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G06410_001
EnsemblPlants:GSMUA_Achr5P06410_001	EnsemblPlants:GSMUA_Achr5T06410_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0SW70	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002954FC4	SEG:seg

Description

Eukaryotic initiation factor 4A-8 [Source:GMGC_GENE;Acc:GSMUA_Achr5G06410_001]

Coordinates

chr5:+:4691717..4700195

Molecular Weight (calculated)

49092.5 Da

IEP (calculated)

7.361

GRAVY (calculated)

-0.114

Length

437 amino acids

Sequence
(BLAST)

001: MAYLLRLTTR LIYGKRCCDE LNLKGEPLAL SLTQQKLCLC LLSASLSNTR SLSAPRSPLL SREILAIMAG VAPEGSQFDA RQYDAKMNEL LSQDGQDFFA
101: SYDEVFDSFD AMGLQENLLR GIYAYGFEKP SAIQQRGIVP FCKGLDVIQQ AQSGTGKTAT FCAGILQQLD YGLVQCQALV LAPTRELAQQ IEKVMRALGD
201: YLGVKVHACV GGTSVREDQR ILSSGVHVVV GTPGRVFDML RRQSLRPDYI KMFVLDEADE MLSRGFKDQI YDIFQLLPSK IQVGLFSATM PPEALEITRK
301: FMNKPSVIFV NTRRKVDWLT DKMRSRDHTV SATHGDMDQN TRDIIMREFR SGSSRVLITT DLLARGIDVQ QVSLVINYDL PTQPENYLHR IGRSGRFGRK
401: GVAINFVTVD DERMLFDIQR FYNVVIEELP SNVADLI

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.