Factsheet for GSMUA_Achr6P27990_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023224	Potato	nucleus	45.36	68.54
KXG34209	Sorghum	plastid	61.65	67.49
TraesCS3B01G592900.1	Wheat	plastid	60.82	65.85
TraesCS3D01G530600.1	Wheat	plastid	60.62	65.48
Zm00001d011790_P001	Maize	plastid	59.38	64.43
Os01t0970600-01	Rice	plastid	61.24	62.66
Solyc01g079800.2.1	Tomato	plastid	59.18	62.53
KRH02098	Soybean	cytosol	29.48	62.17
VIT_05s0020g02870.t01	Wine grape	extracellular	61.03	60.91
HORVU3Hr1G114220.3	Barley	plastid	60.41	59.19
CDY02574	Canola	plastid	58.14	59.0
KRH51049	Soybean	plastid	57.32	58.9
Bra023712.1-P	Field mustard	plastid	57.94	58.79
CDY47205	Canola	plastid	57.94	58.79
AT5G19210.2	Thale cress	plastid	56.91	58.47
GSMUA_AchrUn_...	Banana	cytosol	18.97	24.86
GSMUA_Achr2P19480_001	Banana	cytosol	18.76	24.59
GSMUA_Achr10P...	Banana	cytosol	18.97	24.02
GSMUA_Achr8P24670_001	Banana	cytosol	18.56	23.94
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	20.21	23.73
GSMUA_Achr9P23810_001	Banana	cytosol	18.97	23.71
GSMUA_Achr7P19690_001	Banana	cytosol	17.11	23.51
GSMUA_Achr3P27120_001	Banana	cytosol	15.05	21.92
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	18.76	20.82
GSMUA_Achr10P...	Banana	nucleus	18.97	19.09
GSMUA_Achr5P12220_001	Banana	cytosol	19.18	18.9
GSMUA_Achr8P05380_001	Banana	cytosol	17.53	18.36
GSMUA_Achr2P10560_001	Banana	cytosol	18.35	18.31
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	18.56	18.29
GSMUA_Achr9P13950_001	Banana	mitochondrion	11.13	17.59
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	8.25	17.47
GSMUA_Achr6P14220_001	Banana	cytosol	18.76	17.4
GSMUA_Achr1P01890_001	Banana	plastid	18.56	17.01
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	16.49	16.06
GSMUA_Achr11P...	Banana	cytosol	18.35	15.75

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr6G27990_001	EnsemblPlants:GSMUA_Achr6P27990_001	EnsemblPlants:GSMUA_Achr6T27990_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0TAU4	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF340	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002965A20
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G27990_001]

Coordinates

chr6:+:28466699..28475998

Molecular Weight (calculated)

53825.6 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.013

Length

485 amino acids

Sequence
(BLAST)

001: MACLCGGAAA WALPGIRCSL PVDLLSSPRA PKFPGRWHAV PLSSRFFSFS SYPVISSNAS SALFCGGAQA AQAPPSAAPT LREICRGKVP EHILQRAEEI
101: GYVLPTDVQR QSLPLLLAGR DCILHAQTGS GKTLAYMLSV FSAVDFRRSA VQALIIVPSR ELGIQVTKVA RMLAAKPTGF EKMQACTIMA LLDGGMLKRH
201: KSWLKTEPPE IVVATIGSLC QMLEKHVLKL EAMQILVIDE VDFMFHSSKQ VHSLRKLLTS YSTIDNRQTV LASASIPQHN RFLYDCIQQK WTKNDVVHIH
301: VNPVEPMPSH LCHRFVICKK KEKLCTLLNL LEQDSPRSGI IFVGEQSEKS KKAGQPPSTA LVLDFLKASY RGGLEVLLLD DDMNFNARAG SFTEVRQRDC
401: LLVSTDLASR GLDLPQTTHI YNFDLPRTAV DYLHRAGRTG RVPFSNDPCS VTSLLAQEER FVLQRFENEL MFQCEELFLQ SIMTT

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.