Factsheet for TraesCS3D01G530600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G592900.1	Wheat	plastid	95.77	95.98
HORVU3Hr1G114220.3	Barley	plastid	95.32	86.46
KXG34209	Sorghum	plastid	81.29	82.39
Os01t0970600-01	Rice	plastid	83.74	79.32
Zm00001d011790_P001	Maize	plastid	77.51	77.85
GSMUA_Achr6P27990_001	Banana	plastid	65.48	60.62
PGSC0003DMT400023224	Potato	nucleus	42.98	60.12
KRH02098	Soybean	cytosol	30.07	58.7
CDY02574	Canola	plastid	59.91	56.28
VIT_05s0020g02870.t01	Wine grape	extracellular	60.8	56.17
Bra023712.1-P	Field mustard	plastid	59.69	56.07
CDY47205	Canola	plastid	59.69	56.07
AT5G19210.2	Thale cress	plastid	58.8	55.93
Solyc01g079800.2.1	Tomato	plastid	56.35	55.12
KRH51049	Soybean	plastid	57.46	54.66
TraesCS7D01G412200.1	Wheat	golgi, nucleus	22.94	24.88
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	22.94	23.3
TraesCS2D01G554300.1	Wheat	nucleus	18.93	21.91
TraesCS2D01G553400.1	Wheat	cytosol	19.6	21.73
TraesCS3D01G204400.1	Wheat	cytosol	20.27	21.26
TraesCS6D01G401900.1	Wheat	nucleus	19.38	21.07
TraesCS1D01G451300.1	Wheat	cytosol	19.6	20.8
TraesCS2D01G366700.1	Wheat	cytosol	22.72	20.08
TraesCS6D01G219400.1	Wheat	cytosol	22.27	19.12
TraesCS5D01G532700.1	Wheat	cytosol	19.82	18.66
TraesCS1D01G164500.1	Wheat	cytosol	21.83	18.63
TraesCS6D01G216300.1	Wheat	mitochondrion	21.83	18.22
TraesCS4D01G272900.1	Wheat	cytosol	19.6	17.32
TraesCS6D01G173700.3	Wheat	cytosol	20.27	6.77

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF340	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G530600	EnsemblPlants:TraesCS3D01G530600.1	TIGR:cd00079	SEG:seg	:

Description

No Description!

Coordinates

chr3D:+:607094610..607097645

Molecular Weight (calculated)

49286.6 Da

IEP (calculated)

9.901

GRAVY (calculated)

-0.024

Length

449 amino acids

Sequence
(BLAST)

001: MAAAASTATL SGCARPLPST LNSSPSSTRL APFASRSRPR RLRAAAAAAT LREVCSGRVP DHVLQGAEDV GYISPTEVQE QSLPVLLSGL DCILHAQTGS
101: GKTLAYLLAV FSAIDVGRSS VQALVIVPTR ELGIQVTKVA RLLAAKTCNV MALLDGGMLT RQKSWLKAKP PAIIVATVAS LCQMVEKRAF SLGSIKILVI
201: DEVDFIFGSS KQVNSLRKIL NSYTAASSRQ TIFASASIPQ HNRFVHDCVQ HKWTKSDVVH VHVNPVQPMP SHLRHTYVIC SKKERLHVLL SLLERDAPKS
301: VIIFVAQQSE KSKRAGNPPS STLVVEFLRA EYKGTLEVLV LEEDMNFNAR ATSFTEVKGK GFLLVSTDIA SRGFDLPQTS HIYNFDLPKT ATDYLHRAGR
401: TGREPFSKSE CSVTTLITEE ERFVLQRFQN ELKFHSQQLP LESMFTFNL

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.