Factsheet for TraesCS3B01G592900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G530600.1	Wheat	plastid	95.98	95.77
HORVU3Hr1G114220.3	Barley	plastid	95.09	86.06
KXG34209	Sorghum	plastid	81.7	82.62
Os01t0970600-01	Rice	plastid	83.93	79.32
Zm00001d011790_P001	Maize	plastid	77.9	78.08
GSMUA_Achr6P27990_001	Banana	plastid	65.85	60.82
PGSC0003DMT400023224	Potato	nucleus	43.3	60.44
KRH02098	Soybean	cytosol	30.36	59.13
CDY02574	Canola	plastid	60.27	56.49
VIT_05s0020g02870.t01	Wine grape	extracellular	61.16	56.38
Bra023712.1-P	Field mustard	plastid	60.04	56.28
CDY47205	Canola	plastid	60.04	56.28
AT5G19210.2	Thale cress	plastid	59.15	56.14
Solyc01g079800.2.1	Tomato	plastid	56.92	55.56
KRH51049	Soybean	plastid	57.81	54.87
TraesCS6B01G144100.1	Wheat	cytosol	11.38	26.7
TraesCS7B01G320000.1	Wheat	cytosol	22.99	24.88
TraesCS2B01G584200.1	Wheat	mitochondrion	20.09	22.11
TraesCS3B01G224400.1	Wheat	cytosol	20.76	21.73
TraesCS6B01G472700.1	Wheat	nucleus	19.64	21.36
TraesCS1B01G477500.1	Wheat	cytosol	20.54	21.35
TraesCS2B01G387200.1	Wheat	cytosol	22.99	20.64
TraesCS6B01G217800.1	Wheat	cytosol	18.75	19.95
TraesCS6B01G265300.1	Wheat	cytosol	22.54	19.31
TraesCS6B01G144000.1	Wheat	golgi	22.99	18.69
TraesCS1B01G189900.1	Wheat	cytosol	21.88	18.67
TraesCS6B01G262800.1	Wheat	mitochondrion	25.0	18.64
TraesCS5B01G534600.1	Wheat	cytosol	19.2	17.84
TraesCS4B01G274200.1	Wheat	cytosol	18.97	16.8
TraesCS6B01G217700.1	Wheat	cytosol	20.31	6.82

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF340	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3B01G592900	EnsemblPlants:TraesCS3B01G592900.1	TIGR:cd00079	SEG:seg	:

Description

No Description!

Coordinates

chr3B:+:816604846..816607749

Molecular Weight (calculated)

49354.7 Da

IEP (calculated)

9.646

GRAVY (calculated)

-0.036

Length

448 amino acids

Sequence
(BLAST)

001: MAAAAYTAKL SGCTRPLPST LSSSPRATRL APFASRSRPR ALLAAAAATL REVCSGRVPD HVLQRAEDVG YTSPTEVQEQ SLPVLLSGQD CILHAQTGSG
101: KTLAYLLAVF SAIDVGRSSV QALVIVPTRE LGIQVTKVAR LLAAKTCNVM ALLDGGMLTR QKSWLKAEPP AIIVATVASL CQMVEKRAFS LGSIKVLVID
201: EVDFIFGSSK QVNSLRKILN SYTAASSRQT VFASASIPQH NRFVHDCVQH KWTKSDVVHV HVNPVQPMPS HLRHTYVICS KKERLHVLLS LLERDAPKSV
301: IIFVAQQSEK SKRAGNPPPS TLVVEFLRTE YKGILEVLVL EEDMNFNARA TSFTEVKGKG FLLVSTDIAS RGFDLPQTSH IYNFDLPKTA TDYLHRAGRT
401: GREPFSKSEC SVTTLITEEE HFVLQRFQNE LKFHSQQLPL ESMFTFNL

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.