Factsheet for PGSC0003DMT400023224

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079800.2.1	Tomato	plastid	97.2	67.97
KRH02098	Soybean	cytosol	46.11	64.35
VIT_05s0020g02870.t01	Wine grape	extracellular	74.77	49.38
KRH51049	Soybean	plastid	69.16	47.03
CDY02574	Canola	plastid	68.85	46.23
CDY47205	Canola	plastid	68.85	46.23
Bra023712.1-P	Field mustard	plastid	68.22	45.82
AT5G19210.2	Thale cress	plastid	66.98	45.55
KXG34209	Sorghum	plastid	62.62	45.37
GSMUA_Achr6P27990_001	Banana	plastid	68.54	45.36
Zm00001d011790_P001	Maize	plastid	61.68	44.3
TraesCS3B01G592900.1	Wheat	plastid	60.44	43.3
TraesCS3D01G530600.1	Wheat	plastid	60.12	42.98
Os01t0970600-01	Rice	plastid	62.31	42.19
HORVU3Hr1G114220.3	Barley	plastid	59.5	38.59
PGSC0003DMT400012518	Potato	cytosol	24.3	18.89
PGSC0003DMT400075336	Potato	cytosol	23.68	18.54
PGSC0003DMT400021166	Potato	cytosol	23.68	18.4
PGSC0003DMT400075339	Potato	cytosol	23.68	18.4
PGSC0003DMT400088289	Potato	cytosol	23.68	18.36
PGSC0003DMT400019783	Potato	cytosol	21.81	17.11
PGSC0003DMT400053566	Potato	cytosol	19.31	14.52
PGSC0003DMT400052757	Potato	cytosol	19.0	14.25
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	24.3	14.23
PGSC0003DMT400022137	Potato	nucleus	16.82	10.51

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:M1AHZ9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400008995	PGSC:PGSC0003DMG400008995
EnsemblPlants:PGSC0003DMT400023224	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF340	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000295EEDF	SEG:seg	:	:	:

Description

Chloroplast RNA helicase VDL isoform 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400008995]

Coordinates

chr1:+:62137821..62144270

Molecular Weight (calculated)

35856.4 Da

IEP (calculated)

8.644

GRAVY (calculated)

-0.151

Length

321 amino acids

Sequence
(BLAST)

001: MQVTKVARML AANPSEHESG LKSCTVMALL DGGMLKRHKS WLKAEPPTIV VATIGSLCQM LEKHILKLDT CQVLVVDEVD FMFNSSKEVS SLKRLLTSYS
101: SSKNRQTIFA SASIPQHRRF LYDCMQQKWT RADVVHVHVN SVEPMPSCLH HRFVVCNRTE KNPMLLSLLQ TDSPGSAIIF VSEQSGKSKK AGSAPPTTLL
201: VDFLKSSRGR FSDVSLLEED MNFNQRAASL SELRGGGGGG GYLLVATDIA ARGVDLPETT HIYNFDIPKD AVNYLHRAGR TGRKPFSDKK CFVTSIITVE
301: ERFVLQRFEN ELMFCCEQLF F

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.