Factsheet for VIT_05s0020g02870.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 8
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023224	Potato	nucleus	49.38	74.77
KRH02098	Soybean	cytosol	33.33	70.43
Solyc01g079800.2.1	Tomato	plastid	64.4	68.19
AT5G19210.2	Thale cress	plastid	65.02	66.95
KRH51049	Soybean	plastid	64.81	66.74
CDY02574	Canola	plastid	65.02	66.11
CDY47205	Canola	plastid	64.4	65.48
Bra023712.1-P	Field mustard	plastid	64.2	65.27
KXG34209	Sorghum	plastid	58.85	64.56
Zm00001d011790_P001	Maize	plastid	57.0	61.97
TraesCS3B01G592900.1	Wheat	plastid	56.38	61.16
GSMUA_Achr6P27990_001	Banana	plastid	60.91	61.03
TraesCS3D01G530600.1	Wheat	plastid	56.17	60.8
Os01t0970600-01	Rice	plastid	58.23	59.7
HORVU3Hr1G114220.3	Barley	plastid	56.17	55.15
VIT_04s0008g00990.t01	Wine grape	cytosol	7.82	30.89
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	21.6	25.42
VIT_11s0016g01920.t01	Wine grape	cytosol	21.6	25.42
VIT_06s0080g00550.t01	Wine grape	cytosol	21.19	24.82
VIT_09s0002g01760.t01	Wine grape	cytosol	21.19	23.62
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	25.72	22.44
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	18.72	18.96
VIT_09s0002g06660.t01	Wine grape	cytosol	16.67	18.93
VIT_04s0008g05330.t01	Wine grape	cytosol	16.87	17.94
VIT_15s0046g03200.t01	Wine grape	cytosol	18.11	17.92
VIT_08s0007g04400.t01	Wine grape	cytosol	18.72	17.74
VIT_00s2262g00010.t01	Wine grape	cytosol	8.44	16.8
VIT_04s0008g00980.t01	Wine grape	cytosol	2.88	16.67
VIT_08s0007g04430.t01	Wine grape	cytosol	8.85	13.83

Protein Annotations

EntrezGene:100257883	wikigene:100257883	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI26203	ProteinID:CBI26203.3
UniProt:D7T6T2	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN595749	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100257883	wikigene:LOC100257883	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF340	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00015C8279	ArrayExpress:VIT_05s0020g02870	EnsemblPlantsGene:VIT_05s0020g02870	EnsemblPlants:VIT_05s0020g02870.t01
unigene:Vvi.10962	RefSeq:XP_002277780	RefSeq:XP_002277780.1	:	:	:

Description

No Description!

Coordinates

chr5:+:4554257..4559775

Molecular Weight (calculated)

54362.0 Da

IEP (calculated)

8.443

GRAVY (calculated)

-0.076

Length

486 amino acids

Sequence
(BLAST)

001: MASFPTAQFL SLFRTFSGKS CPPRALAPSL NSNRRTDSTV HFTRRVSNSN CNAKPAQATL NSSSITEASD IGERTLTLRE ICQGCVPEHV IALICFRIEE
101: VGFIVPTDVQ QQALPVLLSG RDCILHAQTG SGKTLTYLLL IFSVVNTKIS AVQALIVVPT RELGIQVTKV ARMLAAKPME PELEQKSCTV MALLDGGMLK
201: RHKSWLKAEP PTIVVATVRS LCQMLEKQIF KLESMRVLVI DEVDFMFNAS KQVGSLRKLL TSYSSTNNRQ TVFASASIPQ HRRFLHDCIQ QKWTKSDVVH
301: VHVNPIEPMP SSLHHRFVIC NKYERRQTLL SLLHSDAPEC GIIFVGEQSE KSKKAGNAPS ATLLIDFLKT SYGGCPDILL LEEDMNFNLR AASLSEVRQR
401: GGYLLISTDI AARGVDLPET THIYNFDLPR TVVDYLHRAG RAARKPFSDQ KCCVTNIITS EERFVLQRYE NELMFHCEEL FLSTQC

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.