Factsheet for VIT_02s0025g03790.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g02820.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	VIT_01s0011g02820.t01	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04755	Soybean	cytosol	51.46	93.21
CDY54061	Canola	cytosol	61.88	91.1
VIT_15s0046g03200.t01	Wine grape	cytosol	90.83	88.8
Bra008527.1-P	Field mustard	cytosol	60.0	87.27
Solyc10g017530.2.1	Tomato	nucleus	89.17	87.17
CDY45702	Canola	cytosol	37.29	86.89
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	59.38	83.82
CDY51147	Canola	cytosol	86.46	83.67
Solyc01g094350.2.1	Tomato	nucleus	86.67	83.53
CDY07205	Canola	cytosol	85.0	83.1
AT4G00660.1	Thale cress	cytosol, mitochondrion	87.29	82.97
Os02t0641800-02	Rice	plasma membrane, plastid	87.5	82.68
Os04t0533000-02	Rice	cytosol	85.62	82.53
CDX91901	Canola	cytosol	86.04	82.44
TraesCS2B01G387200.1	Wheat	cytosol	85.62	82.36
Bra037351.1-P	Field mustard	cytosol	87.08	81.96
TraesCS2A01G370200.2	Wheat	cytosol	85.21	81.64
CDX74342	Canola	cytosol	86.88	81.13
Bra000965.1-P	Field mustard	cytosol	86.67	81.09
TraesCS2D01G366700.1	Wheat	cytosol	85.42	80.71
HORVU6Hr1G060630.1	Barley	cytosol	86.67	80.31
Bra007587.1-P	Field mustard	cytosol	78.75	79.92
TraesCS6A01G236800.1	Wheat	cytosol	86.67	79.54
TraesCS6B01G265300.1	Wheat	cytosol	86.67	79.54
Zm00001d051268_P004	Maize	extracellular	86.46	79.5
TraesCS6D01G219400.1	Wheat	cytosol	86.25	79.16
Zm00001d017384_P008	Maize	cytosol	86.46	79.05
Bra003442.1-P	Field mustard	cytosol	78.12	78.62
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	82.29	78.53
CDY58787	Canola	cytosol	78.75	78.42
CDY48935	Canola	cytosol, plastid	77.5	78.32
CDX71756	Canola	cytosol	78.12	78.29
AT3G61240.1	Thale cress	cytosol	80.83	77.91
EER91410	Sorghum	cytosol	81.88	77.51
Os10t0503700-01	Rice	plasma membrane	83.96	77.35
CDY37067	Canola	cytosol	82.08	77.25
EER91411	Sorghum	cytosol	81.46	77.12
CDY27357	Canola	cytosol, plastid	81.25	76.62
TraesCS1A01G174600.1	Wheat	cytosol	83.54	76.38
Bra039312.1-P	Field mustard	cytosol	82.08	76.21
TraesCS1B01G189900.1	Wheat	cytosol	83.33	76.19
TraesCS1D01G164500.1	Wheat	cytosol	83.12	75.86
AT2G45810.1	Thale cress	cytosol, plastid	82.08	74.62
HORVU1Hr1G046020.1	Barley	cytosol	83.33	70.92
Solyc05g048850.2.1	Tomato	mitochondrion	77.71	69.46
VIT_04s0008g00990.t01	Wine grape	cytosol	10.62	41.46
VIT_11s0016g01920.t01	Wine grape	cytosol	31.04	36.08
VIT_04s0008g00980.t01	Wine grape	cytosol	6.25	35.71
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	30.62	35.59
VIT_06s0080g00550.t01	Wine grape	cytosol	29.58	34.22
VIT_09s0002g06660.t01	Wine grape	cytosol	30.42	34.11
VIT_09s0002g01760.t01	Wine grape	cytosol	30.62	33.72
VIT_04s0008g05330.t01	Wine grape	cytosol	30.42	31.95
VIT_00s2262g00010.t01	Wine grape	cytosol	14.79	29.1
VIT_08s0007g04400.t01	Wine grape	cytosol	28.96	27.1
VIT_08s0007g04430.t01	Wine grape	cytosol	15.0	23.15
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	22.92	19.75
VIT_05s0020g02870.t01	Wine grape	extracellular	18.96	18.72

Protein Annotations

EntrezGene:100241111	wikigene:100241111	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB58365	ProteinID:CCB58365.1
InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HUE2	EMBL:FN596251	GO:GO:0000166	GO:GO:0000932	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006417	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0010494	GO:GO:0010501	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538
GO:GO:0033962	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EntrezGene:LOC100241111	wikigene:LOC100241111	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGR:TC62819	TIGR:TC70018
UniParc:UPI00015CD323	ArrayExpress:VIT_02s0025g03790	EnsemblPlantsGene:VIT_02s0025g03790	EnsemblPlants:VIT_02s0025g03790.t01	unigene:Vvi.18931	RefSeq:XP_002271357
RefSeq:XP_002271357.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:3276593..3293176

Molecular Weight (calculated)

55031.4 Da

IEP (calculated)

8.637

GRAVY (calculated)

-0.398

Length

480 amino acids

Sequence
(BLAST)

001: MNPRGRYPPG IGNGRGGNFH SNPNFQNRNP NYQQQQYFQR PPMQNQQQQQ WLRRIPIATD SPANEVEKTV QSEVVDSSSQ DWKAQLRVPP PDTRYKTEDV
101: TATKGNEFED YFLKRELLMG IYEKGFERPS PIQEESIPIA LTGSDILARA KNGTGKTAAF CIPALEKIDP DNNVIQVVIL VPTRELALQT SQVCKELGKH
201: LKIEVMVTTG GTSLKDDIMR LYQPVHLLVG TPGRILDLSK KGICILKDCS VLVMDEADKL LSPEFQPSVE QLIRFLPQNR QILMFSATFP VTVKDFKDRY
301: LKKPYVINLM DELTLKGITQ YYAFVEERQK VHCLNTLFSK LQINQSIIFC NSVNRVELLA KKITELGYSC FYIHAKMLQD HRNRVFHDFR NGACRNLVCT
401: DLFTRGIDIQ AVNVVINFDF PKNSETYLHR VGRSGRFGHL GLAVNLITYE DRFNLYRIEQ ELGAEIKQIP PHIDQAIYCR

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.