Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008439_P001 | |
| Zm00001d027310_P001 | |
| Zm00001d040142_P001 | |
| Zm00001d051566_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91410 | Sorghum | cytosol | 96.02 | 95.27 |
| EER91411 | Sorghum | cytosol | 95.63 | 94.87 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 61.63 | 91.18 |
| Os10t0503700-01 | Rice | plasma membrane | 92.25 | 89.06 |
| KRH04755 | Soybean | cytosol | 46.72 | 88.68 |
| CDY54061 | Canola | cytosol | 55.86 | 86.2 |
| CDY45702 | Canola | cytosol | 35.19 | 85.92 |
| Bra008527.1-P | Field mustard | cytosol | 54.27 | 82.73 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 86.28 | 82.67 |
| Solyc10g017530.2.1 | Tomato | nucleus | 80.52 | 82.48 |
| TraesCS1B01G189900.1 | Wheat | cytosol | 86.08 | 82.48 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 86.08 | 82.32 |
| VIT_02s0025g03790.t01 | Wine grape | cytosol, plastid | 78.53 | 82.29 |
| Zm00001d051268_P004 | Maize | extracellular | 81.71 | 78.74 |
| Solyc01g094350.2.1 | Tomato | nucleus | 77.93 | 78.71 |
| Zm00001d017384_P008 | Maize | cytosol | 81.91 | 78.48 |
| KRH48170 | Soybean | endoplasmic reticulum | 78.33 | 78.33 |
| KRH48173 | Soybean | mitochondrion | 77.53 | 78.0 |
| KRH65096 | Soybean | nucleus | 77.34 | 77.96 |
| KRH65098 | Soybean | endoplasmic reticulum, nucleus | 77.73 | 77.89 |
| CDY07205 | Canola | cytosol | 75.75 | 77.6 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 77.73 | 77.43 |
| CDY51147 | Canola | cytosol | 76.34 | 77.42 |
| CDY48935 | Canola | cytosol, plastid | 72.96 | 77.26 |
| Bra007587.1-P | Field mustard | cytosol | 72.56 | 77.17 |
| HORVU1Hr1G046020.1 | Barley | cytosol | 86.48 | 77.13 |
| CDX91901 | Canola | cytosol | 76.34 | 76.65 |
| Bra003442.1-P | Field mustard | cytosol | 72.56 | 76.52 |
| CDY58787 | Canola | cytosol | 72.96 | 76.14 |
| Bra037351.1-P | Field mustard | cytosol | 77.14 | 76.08 |
| CDX71756 | Canola | cytosol | 72.37 | 75.99 |
| AT3G61240.1 | Thale cress | cytosol | 74.35 | 75.1 |
| Bra000965.1-P | Field mustard | cytosol | 76.54 | 75.05 |
| CDX74342 | Canola | cytosol | 76.54 | 74.9 |
| CDY37067 | Canola | cytosol | 74.16 | 73.14 |
| CDY27357 | Canola | cytosol, plastid | 73.56 | 72.69 |
| Bra039312.1-P | Field mustard | cytosol | 74.16 | 72.15 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 74.35 | 70.83 |
| GSMUA_Achr11P... | Banana | cytosol | 79.13 | 70.44 |
| Solyc05g048850.2.1 | Tomato | mitochondrion | 71.97 | 67.41 |
| Zm00001d014673_P001 | Maize | plastid | 30.22 | 36.72 |
| Zm00001d036480_P001 | Maize | plasma membrane, plastid | 30.22 | 36.72 |
| Zm00001d015251_P001 | Maize | extracellular | 29.82 | 36.59 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 28.23 | 34.89 |
| Zm00001d018542_P006 | Maize | cytosol | 28.23 | 32.05 |
| Zm00001d009761_P004 | Maize | cytosol | 28.83 | 29.65 |
| Zm00001d011149_P002 | Maize | cytosol | 9.54 | 28.92 |
| Zm00001d027728_P001 | Maize | extracellular, plasma membrane | 25.05 | 25.0 |
| Zm00001d011150_P005 | Maize | cytosol | 20.68 | 22.46 |
| Zm00001d011790_P001 | Maize | plastid | 18.69 | 21.03 |
| Zm00001d017345_P002 | Maize | plastid | 20.87 | 16.54 |
| Zm00001d016350_P001 | Maize | vacuole | 14.31 | 14.29 |
| Zm00001d016351_P002 | Maize | nucleus | 25.05 | 14.13 |
Protein Annotations
| EntrezGene:100283799 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:B6TLY3 | InterPro:DEAD/DEAH_box_helicase_dom | EMBL:EU965998 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | ProteinID:ONM05262.1 | ProteinID:ONM05265.1 | ProteinID:ONM05267.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF352 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI000182DDF8 | EnsemblPlantsGene:Zm00001d032526 | EnsemblPlants:Zm00001d032526_P006 | EnsemblPlants:Zm00001d032526_T006 | SEG:seg | : |
Description
DEAD-box ATP-dependent RNA helicase 8
Coordinates
chr1:+:229501664..229511203
Molecular Weight (calculated)
56267.4 Da
IEP (calculated)
8.254
GRAVY (calculated)
-0.386
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MHQPRARYPP GYGSSGGGGG GGGGSGGGRG GSGGGGNHNY YGRNTHPQHQ HHYQQQQQHS HRNSSHQQQW LRRDQGPAVA GPVSGNAVPK TAPQLDAVDS
101: SSQDWKAQLN IPAPDTRYRT EDVTATKGNE FEDYFLKREL LMGIYEKGFE RPSPIQEESI PIALTGSDIL ARAKNGTGKT AAFCIPALEK IDPENNAIQV
201: VILVPTRELA LQTSQVCKEL GKYLNIEVMV STGGTSLKDD IMRLYQPVHL LVGTPGRILD LTRKGICVLK DCSMLVMDEA DKLLAPEFQP SVEALIHFLP
301: PSRQLLMFSA TFPVTVKEFK EKYLPRPYVI NLMDELTLKG ITQYYAFVEE RQKVHCLNTL FSKLQINQSI IFCNSVNRVE LLAKKITELG YSCFYIHAKM
401: LQDHRNRVFH DFRNGACRNL VCTDLFTRGI DIQAVNVVIN FDFPKTSETY LHRVGRSGRY GHLGLAVNLI TYEDRFNLYR IEQELGTEIK TIPPQIDLAV
501: YCQ
101: SSQDWKAQLN IPAPDTRYRT EDVTATKGNE FEDYFLKREL LMGIYEKGFE RPSPIQEESI PIALTGSDIL ARAKNGTGKT AAFCIPALEK IDPENNAIQV
201: VILVPTRELA LQTSQVCKEL GKYLNIEVMV STGGTSLKDD IMRLYQPVHL LVGTPGRILD LTRKGICVLK DCSMLVMDEA DKLLAPEFQP SVEALIHFLP
301: PSRQLLMFSA TFPVTVKEFK EKYLPRPYVI NLMDELTLKG ITQYYAFVEE RQKVHCLNTL FSKLQINQSI IFCNSVNRVE LLAKKITELG YSCFYIHAKM
401: LQDHRNRVFH DFRNGACRNL VCTDLFTRGI DIQAVNVVIN FDFPKTSETY LHRVGRSGRY GHLGLAVNLI TYEDRFNLYR IEQELGTEIK TIPPQIDLAV
501: YCQ
001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ
Arabidopsis Description
RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.