Factsheet for Zm00001d017345_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85369	Sorghum	mitochondrion, plastid	86.3	95.64
Os02t0636300-01	Rice	nucleus	79.06	87.61
Os03t0219700-01	Rice	plastid	78.11	86.56
HORVU6Hr1G059910.1	Barley	mitochondrion	76.06	80.37
TraesCS6A01G234000.1	Wheat	mitochondrion	76.06	80.37
TraesCS6B01G262800.1	Wheat	mitochondrion	75.91	80.2
TraesCS6D01G216300.1	Wheat	mitochondrion	67.56	79.74
GSMUA_Achr1P01890_001	Banana	plastid	54.96	65.97
VIT_02s0025g04190.t01	Wine grape	endoplasmic reticulum, vacuole	56.54	64.45
AT1G12770.2	Thale cress	mitochondrion, plastid	52.44	60.44
Solyc08g080550.1.1	Tomato	nucleus	52.13	60.4
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	52.13	60.4
KRH43643	Soybean	nucleus	52.76	59.61
KRH13813	Soybean	nucleus	52.6	59.43
Zm00001d036480_P001	Maize	plasma membrane, plastid	17.32	26.57
Zm00001d014673_P001	Maize	plastid	17.32	26.57
Zm00001d015251_P001	Maize	extracellular	17.01	26.34
Zm00001d011790_P001	Maize	plastid	18.27	25.95
Zm00001d051840_P003	Maize	extracellular, mitochondrion	15.91	24.82
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	12.6	23.53
Zm00001d018542_P006	Maize	cytosol	15.91	22.8
Zm00001d009761_P004	Maize	cytosol	16.69	21.68
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	16.54	20.87
Zm00001d027728_P001	Maize	extracellular, plasma membrane	16.38	20.63
Zm00001d051268_P004	Maize	extracellular	16.85	20.5
Zm00001d011149_P002	Maize	cytosol	5.35	20.48
Zm00001d017384_P008	Maize	cytosol	16.69	20.19
Zm00001d011150_P005	Maize	cytosol	11.97	16.41
Zm00001d016350_P001	Maize	vacuole	11.02	13.89
Zm00001d016351_P002	Maize	nucleus	14.8	10.54

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6HE80	ProteinID:AQK72956.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810
GO:GO:0008150	GO:GO:0009663	GO:GO:0009987	GO:GO:0010497	GO:GO:0016043	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF537	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0008432F4D
EnsemblPlantsGene:Zm00001d017345	EnsemblPlants:Zm00001d017345_P002	EnsemblPlants:Zm00001d017345_T002	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 47 mitochondrial

Coordinates

chr5:+:193470917..193474048

Molecular Weight (calculated)

69573.2 Da

IEP (calculated)

10.212

GRAVY (calculated)

-0.303

Length

635 amino acids

Sequence
(BLAST)

001: MEREAASAVV RRRRSAEGGA RPQLARGRPG DTRAPCCELV TGLNFEGKDN FGAVIDFTVR SEMRLSIGQV HRNVLALASS RSCFVLGDRV SFRMLSQPRV
101: AGFHQTAWRG SQILEDNRGG PLTLASLEVQ SRVEYGKKGK MERTGGPKPS SRASSLYVKP KVSSNVKPAK SALMKPAGIK KTLKVDEALF SAKSFEELGL
201: PPLLVDQLNK EGLTAPTEVQ SAAIPIIAQK HDVVIQSYTG SGKTLAYLLP ILSDIGPLKR TMEQDHSEKR SGIEAVIVAP SRELGMQIVR EVEKILGPND
301: KRLVQQLVGG ANRSRQEEAL KKNKPIIVVG TPGRISEISA AGKLHTHGCR FLVLDEVDQL LSFNYREDMH RILEHVGRRP GGTSRDILGP LARRSERQTI
401: LVSATIPFSV IRAARSWGHD PVLIRAKSVV PLDSITVPRP ALSQSDANPS SSSQSVNQAA VGSLPPSLEH YYCTAKAQHK VDTLRRCIHA LEAQTVIAFM
501: NNTKPLKDVV FKLEARGIKA TELHGDLGKL ARSTVLKKFK DGEFRVLVTN ELSARGLDVP ECDLVVNLDL PTDSTHYAHR AGRTGRLGRK GIVVTICEES
601: EGFVVRKMRK QLDVAIKPCE FTEGELVVHK EEDVE

Best Arabidopsis Sequence Match ( AT1G12770.1 )
(BLAST)

001: MAASTSTRFL VLLKDFSAFR KISWTCAATN FHRQSRFLCH VAKEDGSLTL ASLDLGNKPR KFGKGKAMKL EGSFVTEMGQ GKVRAVKNDK MKVVKEKKPA
101: EIVSPLFSAK SFEELGLPDS LLDSLEREGF SVPTDVQSAA VPAIIKGHDA VIQSYTGSGK TLAYLLPILS EIGPLAEKSR SSHSENDKRT EIQAMIVAPS
201: RELGMQIVRE VEKLLGPVHR RMVQQLVGGA NRMRQEEALK KNKPAIVVGT PGRIAEISKG GKLHTHGCRF LVLDEVDELL SFNFREDIHR ILEHVGKRSG
301: AGPKGEVDER ANRQTILVSA TVPFSVIRAA KSWSHEPVLV QANKVTPLDT VQPSAPVMSL TPTTSEADGQ IQTTIQSLPP ALKHYYCISK HQHKVDTLRR
401: CVHALDAQSV IAFMNHSRQL KDVVYKLEAR GMNSAEMHGD LGKLGRSTVL KKFKNGEIKV LVTNELSARG LDVAECDLVV NLELPTDAVH YAHRAGRTGR
501: LGRKGTVVTV CEESQVFIVK KMEKQLGLPF LYCEFVDGEL VVTEEDKAII R

Arabidopsis Description

RH47DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8W4E1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.