Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51111 | Canola | cytosol | 57.23 | 38.15 |
| CDY56825 | Canola | cytosol | 47.59 | 34.65 |
| Solyc06g066060.2.1 | Tomato | nucleus | 67.47 | 27.32 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 68.67 | 26.64 |
| PGSC0003DMT400052757 | Potato | cytosol | 68.07 | 26.4 |
| Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 68.67 | 26.39 |
| Os01t0549700-01 | Rice | cytosol, plastid | 68.67 | 26.39 |
| PGSC0003DMT400053566 | Potato | cytosol | 67.47 | 26.23 |
| AT5G11170.1 | Thale cress | cytosol | 67.47 | 26.23 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 67.47 | 26.17 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 67.47 | 26.17 |
| CDY71952 | Canola | cytosol | 63.86 | 25.42 |
| Bra008984.1-P | Field mustard | cytosol | 65.06 | 25.35 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 66.27 | 25.23 |
| KRH44441 | Soybean | cytosol, nucleus | 63.86 | 24.88 |
| KRH47464 | Soybean | nucleus | 63.86 | 24.88 |
| CDY51112 | Canola | cytosol | 65.66 | 24.77 |
| Bra023312.1-P | Field mustard | cytosol | 65.06 | 24.77 |
| CDX85725 | Canola | cytosol | 65.66 | 24.66 |
| Bra023311.1-P | Field mustard | cytosol | 63.25 | 24.59 |
| KRH52452 | Soybean | nucleus | 63.25 | 24.59 |
| KRH61783 | Soybean | cytosol | 63.25 | 24.59 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 67.47 | 24.51 |
| GSMUA_Achr8P05380_001 | Banana | cytosol | 68.07 | 24.41 |
| CDX70383 | Canola | cytosol | 65.06 | 24.16 |
| Bra008983.1-P | Field mustard | cytosol | 68.07 | 23.94 |
| Solyc08g061000.2.1 | Tomato | nucleus | 67.47 | 23.09 |
| AT5G11200.2 | Thale cress | cytosol | 67.47 | 23.05 |
| Zm00001d009761_P004 | Maize | cytosol | 67.47 | 22.9 |
| GSMUA_Achr3P26010_001 | Banana | endoplasmic reticulum | 67.47 | 22.49 |
| CDX69778 | Canola | cytosol | 65.06 | 21.82 |
| CDX78412 | Canola | cytosol | 65.06 | 21.73 |
| CDX85726 | Canola | cytosol | 63.86 | 21.63 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 65.06 | 20.65 |
| Bra006091.1-P | Field mustard | cytosol | 64.46 | 20.42 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 33.73 | 18.73 |
| Zm00001d013910_P002 | Maize | endoplasmic reticulum, vacuole | 26.51 | 12.94 |
| Zm00001d014673_P001 | Maize | plastid | 27.71 | 11.11 |
| Zm00001d036480_P001 | Maize | plasma membrane, plastid | 27.71 | 11.11 |
| Zm00001d015251_P001 | Maize | extracellular | 27.11 | 10.98 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 25.3 | 10.32 |
| Zm00001d032526_P006 | Maize | cytosol, mitochondrion, nucleus | 28.92 | 9.54 |
| Zm00001d018542_P006 | Maize | cytosol | 25.3 | 9.48 |
| Zm00001d051268_P004 | Maize | extracellular | 29.52 | 9.39 |
| Zm00001d017384_P008 | Maize | cytosol | 29.52 | 9.33 |
| Zm00001d027728_P001 | Maize | extracellular, plasma membrane | 23.49 | 7.74 |
| Zm00001d011790_P001 | Maize | plastid | 19.28 | 7.16 |
| Zm00001d016350_P001 | Maize | vacuole | 16.27 | 5.36 |
| Zm00001d017345_P002 | Maize | plastid | 20.48 | 5.35 |
| Zm00001d011150_P005 | Maize | cytosol | 10.24 | 3.67 |
| Zm00001d016351_P002 | Maize | nucleus | 18.67 | 3.48 |
Protein Annotations
| EnsemblPlants:Zm00001d011149_P002 | EnsemblPlants:Zm00001d011149_T002 | EnsemblPlantsGene:Zm00001d011149 | Gene3D:3.40.50.300 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0016787 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF530 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:AQK95888.1 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI000842ABBD | UniProt:A0A1D6FX05 | MapMan:35.1 | : | : | : |
Description
DEAD-box ATP-dependent RNA helicase 56
Coordinates
chr8:-:140722935..140727923
Molecular Weight (calculated)
18545.8 Da
IEP (calculated)
4.907
GRAVY (calculated)
-0.382
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGERRCRAR ESDDAETRGS AAELGCGFDR LTRYKNFKEG HKRILVATDL VGRGIDIERV NIVVNYDMPD SADTYLHRVG RAGRFGTKGL AITFVSSSDS
101: DVLNQVQERF EVDIKELPEQ IDTSTYSKYC ISESLTDIHG TEMSSELTCH SINSAILMIE VNQCLV
101: DVLNQVQERF EVDIKELPEQ IDTSTYSKYC ISESLTDIHG TEMSSELTCH SINSAILMIE VNQCLV
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
Arabidopsis Description
RH15DEAD-box ATP-dependent RNA helicase 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.