Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g066060.2.1 | Tomato | nucleus | 79.62 | 80.98 |
| AT5G11170.1 | Thale cress | cytosol | 82.73 | 80.8 |
| CDY51112 | Canola | cytosol | 83.93 | 79.55 |
| CDX85725 | Canola | cytosol | 83.93 | 79.19 |
| CDX70383 | Canola | cytosol | 84.41 | 78.75 |
| PGSC0003DMT400053566 | Potato | cytosol | 80.1 | 78.22 |
| PGSC0003DMT400052757 | Potato | cytosol | 79.62 | 77.57 |
| CDX69778 | Canola | cytosol | 91.85 | 77.37 |
| Bra008984.1-P | Field mustard | cytosol | 78.9 | 77.23 |
| VIT_09s0002g06660.t01 | Wine grape | cytosol | 78.9 | 76.87 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 77.46 | 76.36 |
| KXG22711 | Sorghum | cytosol | 78.18 | 75.99 |
| TraesCS3B01G224400.1 | Wheat | cytosol | 77.94 | 75.93 |
| KRH47464 | Soybean | nucleus | 77.46 | 75.82 |
| KRH44441 | Soybean | cytosol, nucleus | 77.46 | 75.82 |
| KXG32708 | Sorghum | cytosol | 77.7 | 75.7 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 77.7 | 75.7 |
| TraesCS1B01G477500.1 | Wheat | cytosol | 77.46 | 74.94 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 77.46 | 74.42 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 77.7 | 74.31 |
| Os01t0549700-01 | Rice | cytosol, plastid | 76.98 | 74.31 |
| Os01t0550000-01 | Rice | cytosol, nucleus, plasma membrane | 76.98 | 74.31 |
| CDX69777 | Canola | cytosol, nucleus, plasma membrane | 91.13 | 72.66 |
| AT5G11200.2 | Thale cress | cytosol | 84.65 | 72.63 |
| VIT_04s0008g05330.t01 | Wine grape | cytosol | 79.38 | 72.43 |
| CDX78412 | Canola | cytosol | 85.37 | 71.63 |
| CDX85726 | Canola | cytosol | 83.69 | 71.22 |
| GSMUA_Achr8P05380_001 | Banana | cytosol | 78.18 | 70.41 |
| CDY51111 | Canola | cytosol | 41.49 | 69.48 |
| Solyc08g061000.2.1 | Tomato | nucleus | 80.1 | 68.87 |
| HORVU1Hr1G095100.5 | Barley | cytosol | 77.22 | 68.66 |
| Zm00001d009761_P004 | Maize | cytosol | 78.42 | 66.87 |
| GSMUA_Achr3P26010_001 | Banana | endoplasmic reticulum | 77.7 | 65.06 |
| Zm00001d011149_P002 | Maize | cytosol | 25.42 | 63.86 |
| CDY56825 | Canola | cytosol | 33.09 | 60.53 |
| Zm00001d011150_P005 | Maize | cytosol | 56.12 | 50.54 |
| CDY37498 | Canola | cytosol, mitochondrion | 9.59 | 43.48 |
| CDY23782 | Canola | endoplasmic reticulum, extracellular, vacuole | 30.94 | 43.14 |
| CDY26130 | Canola | cytosol | 10.07 | 41.58 |
| CDY67069 | Canola | cytosol | 9.35 | 38.61 |
| CDY45702 | Canola | cytosol | 18.23 | 36.89 |
| CDY54061 | Canola | cytosol | 26.62 | 34.05 |
| CDY22577 | Canola | cytosol | 11.99 | 33.56 |
| CDY33073 | Canola | cytosol | 32.85 | 33.25 |
| CDY24057 | Canola | cytosol | 32.61 | 33.01 |
| CDY39079 | Canola | cytosol | 32.13 | 32.52 |
| CDY08220 | Canola | cytosol | 31.89 | 32.28 |
| CDY10607 | Canola | cytosol | 31.65 | 32.12 |
| CDY02469 | Canola | cytosol | 31.65 | 32.04 |
| CDY32586 | Canola | cytosol | 28.78 | 31.75 |
| CDY22956 | Canola | cytosol | 30.22 | 30.88 |
| CDX82280 | Canola | cytosol | 30.22 | 30.88 |
| CDY55205 | Canola | cytosol | 31.18 | 30.73 |
| CDY51692 | Canola | cytosol | 29.98 | 30.64 |
| CDY24617 | Canola | cytosol | 29.98 | 30.64 |
| CDY42205 | Canola | cytosol | 29.98 | 30.64 |
| CDY33416 | Canola | cytosol | 29.98 | 30.64 |
| CDX97528 | Canola | cytosol | 31.18 | 30.59 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.18 | 30.45 |
| CDX82505 | Canola | cytosol | 30.94 | 30.14 |
| CDY58940 | Canola | cytosol | 29.02 | 29.95 |
| CDX75739 | Canola | cytosol | 31.18 | 29.82 |
| CDY03623 | Canola | cytosol | 28.78 | 29.7 |
| CDY72259 | Canola | cytosol | 15.11 | 28.38 |
| CDY07205 | Canola | cytosol | 31.18 | 26.48 |
| CDY58787 | Canola | cytosol | 30.46 | 26.35 |
| CDY48935 | Canola | cytosol, plastid | 29.98 | 26.32 |
| CDY11154 | Canola | cytosol | 12.71 | 26.24 |
| CDX71756 | Canola | cytosol | 29.98 | 26.1 |
| CDY51147 | Canola | cytosol | 30.7 | 25.81 |
| CDX91901 | Canola | cytosol | 30.46 | 25.35 |
| CDY27357 | Canola | cytosol, plastid | 30.46 | 24.95 |
| CDY37067 | Canola | cytosol | 30.46 | 24.9 |
| CDX74342 | Canola | cytosol | 30.46 | 24.71 |
| CDY54037 | Canola | cytosol | 15.35 | 23.97 |
| CDX67556 | Canola | cytosol | 26.62 | 23.52 |
| CDY53867 | Canola | cytosol | 23.5 | 23.22 |
| CDX95397 | Canola | cytosol | 27.1 | 22.87 |
| CDX76225 | Canola | cytosol | 26.86 | 22.58 |
| CDY13319 | Canola | cytosol | 26.38 | 22.45 |
| CDX72939 | Canola | mitochondrion, nucleus | 23.5 | 21.03 |
| CDY47205 | Canola | plastid | 20.38 | 17.78 |
| CDY02574 | Canola | plastid | 20.38 | 17.78 |
| CDY68148 | Canola | nucleus | 23.74 | 13.4 |
| CDY49860 | Canola | cytosol | 2.64 | 8.8 |
Protein Annotations
| MapMan:16.11.1.3 | Gene3D:3.40.50.300 | GO:A0A078K1Z4 | UniProt:A0A078K1Z4 | EnsemblPlants:CDY71952 | ProteinID:CDY71952 |
| ProteinID:CDY71952.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00022681001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF530 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EE4955 | : |
Description
BnaAnng39360DBnaAnng39360D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K1Z4]
Coordinates
chrLK048248:-:25..2371
Molecular Weight (calculated)
46797.7 Da
IEP (calculated)
7.353
GRAVY (calculated)
-0.145
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: SVQHECIPQA ILGMDVICQA KSGMGKTAVF VLSTLQQIEP SPGQVSALIL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNNKIHKE LLKNECPHIV
101: VGTPGRVLGL ARDKDLSLKN VRHFILDECD KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDDSEN WETLKVSLSF GVALGSICKP
201: GGRGSLFRGS VSPMEIYVDD EAKLTLHGLV QHYIKLSEME KNRKLNDLLD ALDFNQVVIF VKSVSRAGEL NKLLIECNFP SICIHSGMSQ EERLTHYKSF
301: KEGHKRILVA TDLVGRGIDI ERVNIVINYD MPDSADTYLH RVGRAGRFGT KGLAITFVAS ASDSEVLNQV QARFEVDIKE LPEQIDTSTY IASSLSKNFR
401: LQQASESFAT IVKHHPL
101: VGTPGRVLGL ARDKDLSLKN VRHFILDECD KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDDSEN WETLKVSLSF GVALGSICKP
201: GGRGSLFRGS VSPMEIYVDD EAKLTLHGLV QHYIKLSEME KNRKLNDLLD ALDFNQVVIF VKSVSRAGEL NKLLIECNFP SICIHSGMSQ EERLTHYKSF
301: KEGHKRILVA TDLVGRGIDI ERVNIVINYD MPDSADTYLH RVGRAGRFGT KGLAITFVAS ASDSEVLNQV QARFEVDIKE LPEQIDTSTY IASSLSKNFR
401: LQQASESFAT IVKHHPL
001: MDVICQAKSG MGKTAVFVLS TLQQIEPSPG QVSALVLCHT RELAYQICNE FVRFSTYLPD TKVSVFYGGV NIKIHKDLLK NECPHIVVGT PGRVLALARE
101: KDLSLKNVRH FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPVCKKF MQDPMEIYVD DEAKLTLHGL VQHYIKLSEM EKNRKLNDLL
201: DALDFNQVVI FVKSVSRAAE LNKLLVECNF PSICIHSGMS QEERLTRYKS FKEGHKRILV ATDLVGRGID IERVNIVINY DMPDSADTYL HRVGRAGRFG
301: TKGLAITFVA SASDSEVLNQ VQERFEVDIK ELPEQIDTST YMPS
101: KDLSLKNVRH FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPVCKKF MQDPMEIYVD DEAKLTLHGL VQHYIKLSEM EKNRKLNDLL
201: DALDFNQVVI FVKSVSRAAE LNKLLVECNF PSICIHSGMS QEERLTRYKS FKEGHKRILV ATDLVGRGID IERVNIVINY DMPDSADTYL HRVGRAGRFG
301: TKGLAITFVA SASDSEVLNQ VQERFEVDIK ELPEQIDTST YMPS
Arabidopsis Description
RH15DEAD-box ATP-dependent RNA helicase 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.