Factsheet for TraesCS1B01G477500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G451300.1	Wheat	cytosol	97.22	99.05
TraesCS1A01G443400.1	Wheat	cytosol	99.54	98.85
KXG22711	Sorghum	cytosol	95.36	95.8
VIT_09s0002g06660.t01	Wine grape	cytosol	90.95	91.59
TraesCS3B01G224400.1	Wheat	cytosol	90.95	91.59
PGSC0003DMT400053566	Potato	cytosol	90.72	91.57
PGSC0003DMT400052757	Potato	cytosol	89.33	89.95
AT5G11170.1	Thale cress	cytosol	88.86	89.7
Solyc06g066060.2.1	Tomato	nucleus	84.92	89.27
KRH61783	Soybean	cytosol	88.17	88.99
KRH52452	Soybean	nucleus	87.94	88.76
KRH47464	Soybean	nucleus	87.24	88.26
HORVU1Hr1G095100.5	Barley	cytosol	95.82	88.06
Bra023311.1-P	Field mustard	cytosol	87.24	88.06
KRH44441	Soybean	cytosol, nucleus	87.01	88.03
Bra023312.1-P	Field mustard	cytosol	86.77	85.78
CDX85725	Canola	cytosol	87.47	85.29
CDY51112	Canola	cytosol	86.77	85.0
VIT_04s0008g05330.t01	Wine grape	cytosol	90.02	84.9
CDX70383	Canola	cytosol	87.94	84.79
GSMUA_Achr8P05380_001	Banana	cytosol	90.95	84.67
Zm00001d009761_P004	Maize	cytosol	94.43	83.23
Bra008984.1-P	Field mustard	cytosol	82.13	83.1
Solyc08g061000.2.1	Tomato	nucleus	90.72	80.62
AT5G11200.2	Thale cress	cytosol	88.86	78.81
CDY71952	Canola	cytosol	74.94	77.46
CDX69778	Canola	cytosol	87.94	76.57
CDX85726	Canola	cytosol	87.01	76.53
CDX78412	Canola	cytosol	88.17	76.46
Bra008983.1-P	Field mustard	cytosol	83.06	75.85
CDY51111	Canola	cytosol	42.92	74.3
CDX69777	Canola	cytosol, nucleus, plasma membrane	87.94	72.47
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	82.6	71.49
Bra006091.1-P	Field mustard	cytosol	81.21	66.79
CDY56825	Canola	cytosol	29.93	56.58
CDY23782	Canola	endoplasmic reticulum, extracellular, vacuole	30.63	44.15
TraesCS6B01G144100.1	Wheat	cytosol	16.47	37.17
TraesCS7B01G320000.1	Wheat	cytosol	35.03	36.47
TraesCS2B01G584200.1	Wheat	mitochondrion	31.09	32.92
TraesCS6B01G472700.1	Wheat	nucleus	31.09	32.52
TraesCS2B01G387200.1	Wheat	cytosol	34.11	29.46
TraesCS6B01G217800.1	Wheat	cytosol	27.38	28.03
TraesCS6B01G265300.1	Wheat	cytosol	33.87	27.92
TraesCS6B01G144000.1	Wheat	golgi	35.27	27.59
TraesCS1B01G189900.1	Wheat	cytosol	33.41	27.43
TraesCS5B01G534600.1	Wheat	cytosol	28.31	25.31
TraesCS4B01G274200.1	Wheat	cytosol	28.31	24.11
TraesCS3B01G592900.1	Wheat	plastid	21.35	20.54
TraesCS6B01G262800.1	Wheat	mitochondrion	25.75	18.47
TraesCS6B01G217700.1	Wheat	cytosol	28.54	9.21

Protein Annotations

MapMan:16.11.1.3	MapMan:16.4.7.1.1	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF530	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS1B01G477500	EnsemblPlants:TraesCS1B01G477500.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:685719579..685724009

Molecular Weight (calculated)

48724.7 Da

IEP (calculated)

5.480

GRAVY (calculated)

-0.269

Length

431 amino acids

Sequence
(BLAST)

001: MMGEAKENDV YEEELLDYEE DDDKALDASS AKPAADAAQA KKGYVGIHSS GFRDFLLKPE LLRAIQDCGF EHPSEVQHEC IPQAILGMDV ICQAKSGMGK
101: TAVFVLSSLQ QIDPTAGQVA ALVLCHTREL AYQICNEFER FSKFLPELKV AVFYGGVHIK KHQDLLKNDC PHIVVGTPGR ILALARDKDL SLKNVRHFIL
201: DECDKMLESL DMRRDVQEIF KMTPHDKQVM MFSATLSKEI RPICKKFMQD PMEIYVDDEA KLTLHGLVQH YIKLTESEKN RKLNDLLDAL DFNQVVIFVK
301: SVSRAAELNK LLCECNFPSI CIHSGMTQEE RLTRYKNFKE GHKRILVATD LVGRGIDIER VNIVINYDMP DSADTYLHRV GRAGRFGTKG LAITFVSSAS
401: DSDVLNQVQE RFEVDIKELP EQIDTSTYMP S

Best Arabidopsis Sequence Match ( AT5G11170.2 )
(BLAST)

001: MDVICQAKSG MGKTAVFVLS TLQQIEPSPG QVSALVLCHT RELAYQICNE FVRFSTYLPD TKVSVFYGGV NIKIHKDLLK NECPHIVVGT PGRVLALARE
101: KDLSLKNVRH FILDECDKML ESLDMRRDVQ EIFKMTPHDK QVMMFSATLS KEIRPVCKKF MQDPMEIYVD DEAKLTLHGL VQHYIKLSEM EKNRKLNDLL
201: DALDFNQVVI FVKSVSRAAE LNKLLVECNF PSICIHSGMS QEERLTRYKS FKEGHKRILV ATDLVGRGID IERVNIVINY DMPDSADTYL HRVGRAGRFG
301: TKGLAITFVA SASDSEVLNQ VQERFEVDIK ELPEQIDTST YMPS

Arabidopsis Description

RH15DEAD-box ATP-dependent RNA helicase 56 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.