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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 mitochondrion: 26136264
msms PMID: 26136264 doi
S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma
College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G552800.1 Wheat cytosol 89.43 98.64
TraesCS2D01G553400.1 Wheat cytosol 95.33 95.8
TraesCS6B01G472700.1 Wheat nucleus 94.84 93.69
Os03t0566800-01 Rice cytosol, nucleus, plasma membrane 89.68 90.35
Os01t0639100-01 Rice nucleus 89.19 89.85
Zm00001d051840_P003 Maize extracellular, mitochondrion 89.19 89.19
EES07819 Sorghum cytosol 88.94 88.94
GSMUA_Achr9P23810_001 Banana cytosol 84.28 88.4
Solyc11g033280.1.1 Tomato cytosol, nucleus, plastid 83.29 86.7
PGSC0003DMT400019783 Potato cytosol 85.26 84.84
VIT_06s0080g00550.t01 Wine grape cytosol 86.0 84.34
KRH12197 Soybean nucleus 83.05 83.25
KRH37217 Soybean endoplasmic reticulum 83.05 83.05
Zm00001d018542_P006 Maize cytosol 89.19 81.94
CDY33416 Canola cytosol 82.06 81.86
AT3G19760.1 Thale cress cytosol 82.06 81.86
Bra022449.1-P Field mustard cytosol 82.06 81.86
CDY24617 Canola cytosol 82.06 81.86
CDY22956 Canola cytosol 81.82 81.62
CDY42205 Canola cytosol 81.82 81.62
CDY51692 Canola cytosol 81.82 81.62
Bra038231.1-P Field mustard cytosol 81.82 81.62
Bra032127.1-P Field mustard cytosol 81.82 81.62
CDX82280 Canola cytosol 81.57 81.37
GSMUA_Achr3P27120_001 Banana cytosol 63.39 77.48
TraesCS6B01G144100.1 Wheat cytosol 33.42 71.2
AT1G51380.1 Thale cress cytosol 65.85 68.37
CDY03623 Canola cytosol 67.81 68.32
CDY58940 Canola cytosol 67.81 68.32
Bra014267.1-P Field mustard cytosol 67.81 68.32
CDY22577 Canola cytosol 23.83 65.1
TraesCS7B01G320000.1 Wheat cytosol 63.39 62.32
TraesCS6B01G144000.1 Wheat golgi 63.64 47.01
TraesCS6B01G217800.1 Wheat cytosol 42.51 41.09
TraesCS3B01G224400.1 Wheat cytosol 33.17 31.54
TraesCS1B01G477500.1 Wheat cytosol 32.92 31.09
TraesCS2B01G387200.1 Wheat cytosol 34.89 28.46
TraesCS6B01G265300.1 Wheat cytosol 34.89 27.15
TraesCS4B01G274200.1 Wheat cytosol 33.42 26.88
TraesCS1B01G189900.1 Wheat cytosol 34.4 26.67
TraesCS5B01G534600.1 Wheat cytosol 31.2 26.35
TraesCS3B01G592900.1 Wheat plastid 22.11 20.09
TraesCS6B01G262800.1 Wheat mitochondrion 25.31 17.14
TraesCS6B01G217700.1 Wheat cytosol 43.24 13.18
Protein Annotations
MapMan:17.3.1.1.1Gene3D:3.40.50.300InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676
GO:GO:0005488GO:GO:0005524InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001
InterPro:IPR014014InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271ScanProsite:PS00039PFscan:PS51192
PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF57InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487SMART:SM00490SUPFAM:SSF52540EnsemblPlantsGene:TraesCS2B01G584200EnsemblPlants:TraesCS2B01G584200.1TIGR:cd00079
TIGR:cd00268SEG:seg::::
Description
No Description!
Coordinates
chr2B:-:771230408..771234324
Molecular Weight (calculated)
45607.2 Da
IEP (calculated)
6.528
GRAVY (calculated)
-0.124
Length
407 amino acids
Sequence
(BLAST)
001: MAAAAAAAAG SSRRGPMDDD KLSFETSAGV EVVGSFDAMG IREDLLRGIY GYGFEKPSAI QQRAVVPIIA GRDVIAQAQS GTGKTSMVSL SVCQLVDTNI
101: HEVQALILSP TRELATQTER VMQAVGNYMS VSVHACVGGK SIGEDIRKLE AGVHVVSGTP GRVCDMIKRR TLRTRAIKLL VLDEADEMLT RGFKDQIYDV
201: YRYLPPELQV VLISATLPHD ILEITSKFMT DPVRILVKRD ELTLEGIKQF FVAVEKEEWK FDTLCDLYDT LTITQAVIFC NTKRKVDWLT ERMRTNNFTV
301: SAMHGDMPQK ERDAIMSEFR SGTTRVLITT DVWARGLDVQ QVSLVINYDL PNNRELYIHR IGRSGRFGRK GVAINFVRKD DIRILRDIEQ YYSTQIDEMP
401: MNVADLI
Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)
001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
Arabidopsis Description
EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.