Factsheet for PGSC0003DMT400019783

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	95.35	99.74
VIT_06s0080g00550.t01	Wine grape	cytosol	92.67	91.33
KRH12197	Soybean	nucleus	89.73	90.39
GSMUA_Achr9P23810_001	Banana	cytosol	85.57	90.21
KRH37217	Soybean	endoplasmic reticulum	89.73	90.17
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	87.04	88.12
Os01t0639100-01	Rice	nucleus	87.04	88.12
TraesCS2A01G552800.1	Wheat	cytosol	79.46	88.08
Zm00001d051840_P003	Maize	extracellular, mitochondrion	86.06	86.49
EES07819	Sorghum	cytosol	85.82	86.24
TraesCS2D01G554300.1	Wheat	nucleus	81.17	85.57
TraesCS2B01G584200.1	Wheat	mitochondrion	84.84	85.26
AT3G19760.1	Thale cress	cytosol	84.84	85.05
CDY24617	Canola	cytosol	84.35	84.56
Bra022449.1-P	Field mustard	cytosol	84.35	84.56
CDY33416	Canola	cytosol	84.35	84.56
CDY51692	Canola	cytosol	84.11	84.31
CDX82280	Canola	cytosol	84.11	84.31
Bra038231.1-P	Field mustard	cytosol	84.11	84.31
Bra032127.1-P	Field mustard	cytosol	84.11	84.31
CDY42205	Canola	cytosol	84.11	84.31
CDY22956	Canola	cytosol	83.86	84.07
HORVU6Hr1G094560.1	Barley	cytosol	84.6	83.98
TraesCS6D01G401900.1	Wheat	nucleus	84.6	83.78
TraesCS6B01G472700.1	Wheat	nucleus	84.35	83.74
TraesCS6A01G416700.1	Wheat	nucleus	84.35	83.54
TraesCS2D01G553400.1	Wheat	cytosol	82.15	82.96
GSMUA_Achr3P27120_001	Banana	cytosol	65.53	80.48
Zm00001d018542_P006	Maize	cytosol	85.82	79.23
AT1G51380.1	Thale cress	cytosol	68.7	71.68
HORVU3Hr1G015460.1	Barley	cytosol	26.65	71.24
HORVU3Hr1G015500.1	Barley	cytosol	26.65	71.24
CDY58940	Canola	cytosol	69.93	70.79
Bra014267.1-P	Field mustard	cytosol	69.93	70.79
CDY03623	Canola	cytosol	69.68	70.54
HORVU3Hr1G050890.1	Barley	cytosol	26.89	67.9
CDY22577	Canola	cytosol	23.47	64.43
PGSC0003DMT400075339	Potato	cytosol	61.86	61.26
PGSC0003DMT400021166	Potato	cytosol	61.61	61.02
PGSC0003DMT400075336	Potato	cytosol	61.12	60.98
PGSC0003DMT400088289	Potato	cytosol	61.37	60.63
PGSC0003DMT400012518	Potato	cytosol	60.39	59.81
PGSC0003DMT400052757	Potato	cytosol	32.76	31.31
PGSC0003DMT400053566	Potato	cytosol	32.52	31.15
PGSC0003DMT400022137	Potato	nucleus	33.01	26.26
PGSC0003DMT400023224	Potato	nucleus	17.11	21.81
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	26.65	19.89

Protein Annotations

EntrezGene:102579743	MapMan:17.3.1.1.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M1ACK8	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
EnsemblPlantsGene:PGSC0003DMG400007646	PGSC:PGSC0003DMG400007646	EnsemblPlants:PGSC0003DMT400019783	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI000295750F	RefSeq:XP_006366335.1	:	:	:	:

Description

Eukaryotic initiation factor 4A-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400007646]

Coordinates

chr11:+:20351502..20357592

Molecular Weight (calculated)

46213.0 Da

IEP (calculated)

6.199

GRAVY (calculated)

-0.182

Length

409 amino acids

Sequence
(BLAST)

001: MEAVASGSVV PANRRRPPME EDRLVFETSK GVEPITSFAE MGIKDDLLRG IYQYGFEKPS AIQQRAVLPI ISGRDVIAQA QSGTGKTSMI ALTVCQVVDT
101: KNSEVQALIL SPTRELAAQT EKVILAIGDY INIQAHACIG GKSVGEDIRK LEHGVQVVSG TPGRVCDMIK RRTLRTRAIK LLVLDESDEM LSRGFKDQIY
201: DVYRYLPPEL QVVLISATLP NEILEITSKF MTDPVRILVK RDELTLEGIK QFFVAVEREE WKFDTLCDLY DTLTITQAVI FCNTKRKVDW LTNKMRENNF
301: TVSSMHGDMP QKERDAIMAE FRGGTTRVLI TTDVWARGLD VQQVSLVINY DLPNNRELYI HRIGRSGRFG RKGVAINFVK TDDIKILRDI EQYYSTQIDE
401: MPMNVADLI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.