Factsheet for Bra014267.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58940	Canola	cytosol	100.0	100.0
CDY03623	Canola	cytosol	99.26	99.26
AT1G51380.1	Thale cress	cytosol	90.1	92.86
Bra032127.1-P	Field mustard	cytosol	76.24	75.49
Bra038231.1-P	Field mustard	cytosol	76.24	75.49
Bra022449.1-P	Field mustard	cytosol	76.24	75.49
GSMUA_Achr9P23810_001	Banana	cytosol	70.79	73.71
KRH12197	Soybean	nucleus	72.77	72.41
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	70.05	72.38
KRH37217	Soybean	endoplasmic reticulum	72.77	72.24
VIT_06s0080g00550.t01	Wine grape	cytosol	74.01	72.05
Os01t0639100-01	Rice	nucleus	71.78	71.78
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	71.53	71.53
EES07819	Sorghum	cytosol	70.79	70.27
Zm00001d051840_P003	Maize	extracellular, mitochondrion	70.54	70.02
PGSC0003DMT400019783	Potato	cytosol	70.79	69.93
TraesCS2A01G552800.1	Wheat	cytosol	63.37	69.38
HORVU6Hr1G094560.1	Barley	cytosol	69.55	68.2
TraesCS2B01G584200.1	Wheat	mitochondrion	68.32	67.81
TraesCS6D01G401900.1	Wheat	nucleus	69.06	67.55
TraesCS6A01G416700.1	Wheat	nucleus	69.06	67.55
TraesCS2D01G554300.1	Wheat	nucleus	64.85	67.53
TraesCS2D01G553400.1	Wheat	cytosol	67.57	67.41
TraesCS6B01G472700.1	Wheat	nucleus	68.56	67.23
GSMUA_Achr3P27120_001	Banana	cytosol	53.22	64.56
Zm00001d018542_P006	Maize	cytosol	70.3	64.11
HORVU3Hr1G015460.1	Barley	cytosol	22.28	58.82
HORVU3Hr1G015500.1	Barley	cytosol	22.28	58.82
Bra030892.1-P	Field mustard	cytosol	9.41	55.88
HORVU3Hr1G050890.1	Barley	cytosol	22.03	54.94
Bra027387.1-P	Field mustard	cytosol	55.45	54.37
Bra014365.1-P	Field mustard	cytosol	55.45	54.37
Bra021517.1-P	Field mustard	cytosol	55.2	54.13
Bra029124.1-P	Field mustard	cytosol	54.7	53.9
Bra030893.1-P	Field mustard	cytosol	54.95	53.88
Bra001530.1-P	Field mustard	cytosol	55.2	53.61
Bra037977.1-P	Field mustard	cytosol	53.71	52.67
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.95	51.99
Bra008527.1-P	Field mustard	cytosol	27.97	34.24
Bra016037.1-P	Field mustard	cytosol	54.46	30.26
Bra023311.1-P	Field mustard	cytosol	31.93	30.21
Bra023312.1-P	Field mustard	cytosol	31.68	29.36
Bra008984.1-P	Field mustard	cytosol	30.2	28.64
Bra007587.1-P	Field mustard	cytosol	32.43	27.7
Bra003442.1-P	Field mustard	cytosol	32.67	27.67
Bra000965.1-P	Field mustard	cytosol	34.41	27.1
Bra037351.1-P	Field mustard	cytosol	34.16	27.06
Bra008983.1-P	Field mustard	cytosol	30.69	26.27
Bra028547.1-P	Field mustard	cytosol	31.19	25.66
Bra040687.1-P	Field mustard	cytosol	30.94	25.2
Bra039312.1-P	Field mustard	cytosol	32.18	25.15
Bra006091.1-P	Field mustard	cytosol	29.7	22.9
Bra023712.1-P	Field mustard	plastid	22.28	18.83

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra014267	EnsemblPlants:Bra014267.1	EnsemblPlants:Bra014267.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4DCQ1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF57	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002545FA6

Description

AT1G51380 (E=1e-211) | eukaryotic translation initiation factor 4A, putative / eIF-4A, putative

Coordinates

chrA08:+:2090461..2092583

Molecular Weight (calculated)

45519.0 Da

IEP (calculated)

8.842

GRAVY (calculated)

-0.319

Length

404 amino acids

Sequence
(BLAST)

001: MAAAKGNSDW RSVGGALDDE NLVFETTKGI KPIASFDEMG MNDKVLRGVY DYGFKKPSEI QQRAVMPILK GRDVIAQAQS GTGKTSMIAI SVCQIVNTSS
101: RKIQVLVLSP SRELASQTEK TIQAIGVHTS IQAHACIGGK SIGEDIKKLE RGVHAVSGTP GRVYDMIKRG SLQTKSVKLL ILDESDEMLS KGLKDQIYDV
201: YRSLPHDIQV CLISATLPQE ILEMTNKFMT DPVRILVKRD ELTLEGIKQY YVDVGEEEWK FDTLCDLYGR LVINQAIIFC NTRQKVDWLT EKMRSSNFIV
301: SSMHGDKRQK ERDEIMNQFR SFKSRVLIAS DVWARGIDVQ TVSHVINYDV PNNPELYIHR IGRAGRFGRE GVAINFVKNS DMKTLRDIER YYGTKIREMP
401: ADLA

Best Arabidopsis Sequence Match ( AT1G51380.1 )
(BLAST)

001: MEGTLDEENL VFETTKGIKP IKSFDDMGMN DKVLRGVYDY GYKKPSEIQQ RALVPILKGR DVIAQAQSGT GKTSMIAISV CQIVNISSRK VQVLVLSPSR
101: ELASQTEKTI QAIGAHTNIQ AHACIGGKSI GEDIKKLERG VHAVSGTPGR VYDMIKRGSL QTKAVKLLVL DESDEMLSKG LKDQIYDVYR ALPHDIQVCL
201: ISATLPQEIL EMTEKFMTDP VRILVKPDEL TLEGIKQYYV DVDKEEWKFD TLCDLYGRLT INQAIIFCNT RQKVDWLTEK MRSSNFIVSS MHGDKRQKER
301: DDIMNQFRSF KSRVLIASDV WARGIDVQTV SHVINYDIPN NPELYIHRIG RAGRFGREGV AINFVKSSDM KDLKDIERHY GTKIREMPAD LV

Arabidopsis Description

RH34DEAD-box ATP-dependent RNA helicase 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.