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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 23777608
plasma membrane: 27800704
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0639100-01 Rice nucleus 99.5 99.5
Zm00001d051840_P003 Maize extracellular, mitochondrion 94.55 93.86
EES07819 Sorghum cytosol 94.55 93.86
GSMUA_Achr9P23810_001 Banana cytosol 88.61 92.27
TraesCS2A01G552800.1 Wheat cytosol 83.42 91.33
Solyc11g033280.1.1 Tomato cytosol, nucleus, plastid 86.88 89.77
TraesCS2D01G554300.1 Wheat nucleus 86.14 89.69
TraesCS2B01G584200.1 Wheat mitochondrion 90.35 89.68
HORVU6Hr1G094560.1 Barley cytosol 90.59 88.83
TraesCS6A01G416700.1 Wheat nucleus 90.59 88.62
TraesCS6D01G401900.1 Wheat nucleus 90.59 88.62
TraesCS6B01G472700.1 Wheat nucleus 90.1 88.35
TraesCS2D01G553400.1 Wheat cytosol 87.62 87.41
VIT_06s0080g00550.t01 Wine grape cytosol 89.6 87.23
PGSC0003DMT400019783 Potato cytosol 88.12 87.04
KRH12197 Soybean nucleus 87.13 86.7
KRH37217 Soybean endoplasmic reticulum 87.13 86.49
Zm00001d018542_P006 Maize cytosol 94.06 85.78
AT3G19760.1 Thale cress cytosol 85.4 84.56
CDY33416 Canola cytosol 85.15 84.31
Bra022449.1-P Field mustard cytosol 85.15 84.31
CDY42205 Canola cytosol 84.9 84.07
CDY24617 Canola cytosol 84.9 84.07
CDY22956 Canola cytosol 84.9 84.07
Bra038231.1-P Field mustard cytosol 84.9 84.07
Bra032127.1-P Field mustard cytosol 84.9 84.07
CDY51692 Canola cytosol 84.9 84.07
CDX82280 Canola cytosol 84.65 83.82
GSMUA_Achr3P27120_001 Banana cytosol 66.58 80.78
HORVU3Hr1G015460.1 Barley cytosol 28.47 75.16
HORVU3Hr1G015500.1 Barley cytosol 28.47 75.16
AT1G51380.1 Thale cress cytosol 69.55 71.68
Bra014267.1-P Field mustard cytosol 71.53 71.53
CDY58940 Canola cytosol 71.53 71.53
CDY03623 Canola cytosol 71.29 71.29
HORVU3Hr1G050890.1 Barley cytosol 28.47 70.99
CDY22577 Canola cytosol 24.01 65.1
Os06t0701100-02 Rice extracellular, nucleus, plastid 64.11 62.56
Os02t0146600-01 Rice plastid 63.86 62.32
Os01t0549700-01 Rice cytosol, plastid 34.16 31.94
Os01t0550000-01 Rice cytosol, nucleus, plasma membrane 33.91 31.71
Os04t0533000-02 Rice cytosol 35.89 29.12
Os02t0641800-02 Rice plasma membrane, plastid 36.39 28.94
Os03t0158200-01 Rice cytosol, plasma membrane, plastid 34.16 27.33
Os10t0503700-01 Rice plasma membrane 35.15 27.26
Os02t0221300-01 Rice cytosol 42.82 19.64
Os01t0970600-01 Rice plastid 22.03 18.78
Os03t0219700-01 Rice plastid 25.74 18.15
Os02t0636300-01 Rice nucleus 25.74 18.15
Protein Annotations
MapMan:17.3.1.1.1Gene3D:3.40.50.300EntrezGene:4333273ProteinID:AAK50586.1ProteinID:ABF97164.1EMBL:AK103270
ProteinID:BAF12420.1ProteinID:BAS84961.1InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0000184GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0004004GO:GO:0004386GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730
GO:GO:0005737GO:GO:0006139GO:GO:0006397GO:GO:0006412GO:GO:0006417GO:GO:0006810
GO:GO:0008150GO:GO:0008152GO:GO:0008380GO:GO:0009056GO:GO:0009058GO:GO:0009987
GO:GO:0010468GO:GO:0010501GO:GO:0016787GO:GO:0019538GO:GO:0051028GO:GO:0071013
InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014EnsemblPlantsGene:Os03g0566800
EnsemblPlants:Os03t0566800-01InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271ScanProsite:PS00039PFscan:PS51192
PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF57UniProt:Q10I26InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487SMART:SM00490SUPFAM:SSF52540UniParc:UPI00000A1FCBRefSeq:XP_015633220.1
Description
RNA helicase 34DEAD box RNA helicase homologous to eukaryotic initiation factor 4AIII (eIF4AIII), Core components of the exon junction complex (EJC), Regulation of plant height, pollen, and seed development (Os03t0566800-01)
Coordinates
chr3:-:20492421..20496890
Molecular Weight (calculated)
45631.4 Da
IEP (calculated)
6.279
GRAVY (calculated)
-0.149
Length
404 amino acids
Sequence
(BLAST)
001: MAAATTSRRG PGAMDDENLT FETSPGVEVI SSFDQMGIRE DLLRGIYAYG FEKPSAIQQR AVLPIISGRD VIAQAQSGTG KTSMISLSVC QIVDTAVREV
101: QALILSPTRE LAAQTERVML AIGDYINIQV HACIGGKSIG EDIRKLEHGV HVVSGTPGRV CDMIKRRTLR TRAIKLLILD EADEMLGRGF KDQIYDVYRY
201: LPPELQVCLI SATLPHEILE MTSKFMTDPV RILVKRDELT LEGIKQFFVA VEKEEWKFDT LCDLYDTLTI TQAVIFCNTK RKVDWLTERM RSNNFTVSAM
301: HGDMPQKERD AIMGEFRSGA TRVLITTDVW ARGLDVQQVS LVINYDLPNN RELYIHRIGR SGRFGRKGVA INFVKKEDIR ILRDIEQYYS TQIDEMPMNV
401: ADLI
Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)
001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
Arabidopsis Description
EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.