Factsheet for Os10t0503700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0111200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	Os01t0111200-01	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91411	Sorghum	cytosol	90.79	93.29
EER91410	Sorghum	cytosol	90.59	93.1
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	89.06	92.25
KRH04755	Soybean	cytosol	45.68	89.81
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	58.16	89.12
CDY54061	Canola	cytosol	54.32	86.81
TraesCS1A01G174600.1	Wheat	cytosol	87.33	86.67
TraesCS1B01G189900.1	Wheat	cytosol	87.33	86.67
CDY45702	Canola	cytosol	34.17	86.41
TraesCS1D01G164500.1	Wheat	cytosol	86.95	86.12
Solyc10g017530.2.1	Tomato	nucleus	79.65	84.52
Os04t0533000-02	Rice	cytosol	80.61	84.34
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	77.35	83.96
Bra008527.1-P	Field mustard	cytosol	52.98	83.64
Os02t0641800-02	Rice	plasma membrane, plastid	80.81	82.87
Solyc01g094350.2.1	Tomato	nucleus	77.74	81.33
KRH48170	Soybean	endoplasmic reticulum	78.12	80.91
KRH48173	Soybean	mitochondrion	77.35	80.6
KRH65096	Soybean	nucleus	77.16	80.56
HORVU1Hr1G046020.1	Barley	cytosol	87.14	80.5
KRH65098	Soybean	endoplasmic reticulum, nucleus	77.35	80.28
CDY51147	Canola	cytosol	75.62	79.44
CDY07205	Canola	cytosol	74.66	79.23
AT4G00660.1	Thale cress	cytosol, mitochondrion	76.58	79.01
CDX91901	Canola	cytosol	75.24	78.24
Bra037351.1-P	Field mustard	cytosol	76.58	78.24
Bra007587.1-P	Field mustard	cytosol	71.02	78.22
Bra003442.1-P	Field mustard	cytosol	71.21	77.78
CDY48935	Canola	cytosol, plastid	70.83	77.68
CDY58787	Canola	cytosol	71.59	77.39
CDX71756	Canola	cytosol	70.63	76.83
Bra000965.1-P	Field mustard	cytosol	75.43	76.61
CDX74342	Canola	cytosol	75.43	76.46
AT3G61240.1	Thale cress	cytosol	72.94	76.31
CDY37067	Canola	cytosol	72.74	74.31
CDY27357	Canola	cytosol, plastid	71.98	73.67
Bra039312.1-P	Field mustard	cytosol	72.74	73.31
AT2G45810.1	Thale cress	cytosol, plastid	73.7	72.73
GSMUA_Achr11P...	Banana	cytosol	77.35	71.33
Solyc05g048850.2.1	Tomato	mitochondrion	70.83	68.72
Os02t0146600-01	Rice	plastid	29.17	36.72
Os06t0701100-02	Rice	extracellular, nucleus, plastid	29.17	36.72
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	27.26	35.15
Os01t0639100-01	Rice	nucleus	27.06	34.9
Os01t0550000-01	Rice	cytosol, nucleus, plasma membrane	28.21	34.03
Os01t0549700-01	Rice	cytosol, plastid	28.02	33.8
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	24.57	25.35
Os01t0970600-01	Rice	plastid	19.0	20.89
Os03t0219700-01	Rice	plastid	20.92	19.02
Os02t0636300-01	Rice	nucleus	20.35	18.5
Os02t0221300-01	Rice	cytosol	25.34	14.98

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4349053	ProteinID:AAG13612.1	ProteinID:AAX95709.1	ProteinID:ABB47852.2
ProteinID:ABG66172.1	ProteinID:ABG66173.1	EMBL:AK073085	ProteinID:BAF26914.2	ProteinID:BAT11553.1	InterPro:DEAD/DEAH_box_helicase_dom
ProteinID:EEE51233.1	GO:GO:0000166	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0006397	GO:GO:0006412	GO:GO:0006417	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0010494	GO:GO:0010501	GO:GO:0016043	GO:GO:0016787
GO:GO:0019538	GO:GO:0033962	GO:GO:0051028	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os10g0503700	EnsemblPlants:Os10t0503700-01	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF352	UniProt:Q109G2	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SUPFAM:SSF81995	UniParc:UPI00000A0692	RefSeq:XP_015614831.1	SEG:seg	:

Description

RNA helicase 12Similar to ATP-dependent RNA helicase dhh1. (Os10t0503700-01);Similar to ATP-dependent RNA helicase dhh1. (Os10t0503700-02);Similar to ATP-dependent RNA helicase dhh1. (Os10t0503700-03)

Coordinates

chr10:-:19236499..19241922

Molecular Weight (calculated)

57953.3 Da

IEP (calculated)

8.256

GRAVY (calculated)

-0.399

Length

521 amino acids

Sequence
(BLAST)

001: MHHPRARYPP GYTSGGGGGG GGGGGGGRGN GGGGFGGGGG GGGGNHGYYG RGPQPQPQQQ HYHHQAQQLH QHQQQQQHAQ RNSSSQQQQW LRRDQATAAA
101: ASGEVAARTA AQLEAVDSSS EDWKAQLNLP APDTRYRTED VTATKGNEFE DYFLKRELLM GIYEKGFERP SPIQEESIPI ALTGSDILAR AKNGTGKTAA
201: FCIPALEKID PEKNAIQVVI LVPTRELALQ TSQVCKELGK YLNIQVMVST GGTSLKDDIM RLYQPVHLLV GTPGRILDLT RKGICVLKDC SMLVMDEADK
301: LLAPEFQPSI EQLIHFLPAN RQLLMFSATF PVTVKDFKEK YLPRPYVINL MDELTLKGIT QYYAFVEERQ KVHCLNTLFS KLQINQSIIF CNSVNRVELL
401: AKKITELGYS CFYIHAKMLQ DHRNRVFHDF RNGACRNLVC TDLFTRGIDI QAVNVVINFD FPKTSETYLH RVGRSGRFGH LGLAVNLITY EDRFNLYRIE
501: QELGTEIKTI PPQIDLAVYC Q

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.