Factsheet for Zm00001d013910_P002

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008439_P001
Zm00001d027310_P001
Zm00001d040142_P001
Zm00001d051566_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	Zm00001d008439_P001	AT1G26110.1	21798944
AT2G45810.1	Zm00001d027310_P001	AT1G26110.1	21798944
AT2G45810.1	Zm00001d040142_P001	AT1G26110.1	21798944
AT2G45810.1	Zm00001d051566_P001	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45702	Canola	cytosol	51.47	84.95
CDY54061	Canola	cytosol	69.12	72.09
Bra008527.1-P	Field mustard	cytosol	69.41	71.52
KRH04755	Soybean	cytosol	54.71	70.19
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	91.18	61.63
EER91411	Sorghum	cytosol	91.47	61.34
EER91410	Sorghum	cytosol	91.47	61.34
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	83.82	59.38
Os10t0503700-01	Rice	plasma membrane	89.12	58.16
Solyc10g017530.2.1	Tomato	nucleus	82.94	57.43
Bra003442.1-P	Field mustard	cytosol	80.0	57.02
Bra007587.1-P	Field mustard	cytosol	79.12	56.87
CDY07205	Canola	cytosol	82.06	56.82
KRH48173	Soybean	mitochondrion	83.24	56.6
CDY51147	Canola	cytosol	82.35	56.45
CDY48935	Canola	cytosol, plastid	78.82	56.42
KRH65098	Soybean	endoplasmic reticulum, nucleus	83.24	56.37
CDX71756	Canola	cytosol	79.41	56.37
KRH65096	Soybean	nucleus	82.65	56.31
KRH48170	Soybean	endoplasmic reticulum	83.24	56.26
CDY58787	Canola	cytosol	79.71	56.22
AT4G00660.1	Thale cress	cytosol, mitochondrion	83.24	56.04
Solyc01g094350.2.1	Tomato	nucleus	81.76	55.82
TraesCS1A01G174600.1	Wheat	cytosol	86.18	55.81
TraesCS1B01G189900.1	Wheat	cytosol	86.18	55.81
TraesCS1D01G164500.1	Wheat	cytosol	86.18	55.7
CDX91901	Canola	cytosol	82.06	55.69
Zm00001d051268_P004	Maize	extracellular	84.41	54.98
Bra037351.1-P	Field mustard	cytosol	82.35	54.9
Zm00001d017384_P008	Maize	cytosol	84.41	54.67
AT3G61240.1	Thale cress	cytosol	79.71	54.42
Bra000965.1-P	Field mustard	cytosol	82.06	54.39
CDX74342	Canola	cytosol	82.06	54.28
CDY27357	Canola	cytosol, plastid	80.0	53.44
CDY37067	Canola	cytosol	80.0	53.33
Bra039312.1-P	Field mustard	cytosol	80.0	52.61
Solyc05g048850.2.1	Tomato	mitochondrion	82.35	52.14
HORVU1Hr1G046020.1	Barley	cytosol	86.18	51.95
AT2G45810.1	Thale cress	cytosol, plastid	79.71	51.33
GSMUA_Achr11P...	Banana	cytosol	84.12	50.62
Zm00001d051840_P003	Maize	extracellular, mitochondrion	35.0	29.24
Zm00001d015251_P001	Maize	extracellular	35.0	29.02
Zm00001d014673_P001	Maize	plastid	35.29	28.99
Zm00001d036480_P001	Maize	plasma membrane, plastid	35.29	28.99
Zm00001d018542_P006	Maize	cytosol	35.0	26.86
Zm00001d011149_P002	Maize	cytosol	12.94	26.51
Zm00001d009761_P004	Maize	cytosol	32.65	22.7
Zm00001d027728_P001	Maize	extracellular, plasma membrane	26.76	18.06
Zm00001d011790_P001	Maize	plastid	21.18	16.11
Zm00001d011150_P005	Maize	cytosol	20.88	15.33
Zm00001d016350_P001	Maize	vacuole	20.29	13.69
Zm00001d017345_P002	Maize	plastid	23.53	12.6
Zm00001d016351_P002	Maize	nucleus	28.82	10.99

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6GNJ3	ProteinID:AQK64795.1	ProteinID:AQK64796.1	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF352	InterPro:RNA-helicase_DEAD-box_CS
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000843CFB6	EnsemblPlantsGene:Zm00001d013910
EnsemblPlants:Zm00001d013910_P002	EnsemblPlants:Zm00001d013910_T002	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 8

Coordinates

chr5:+:24428231..24432486

Molecular Weight (calculated)

39156.3 Da

IEP (calculated)

7.912

GRAVY (calculated)

0.194

Length

340 amino acids

Sequence
(BLAST)

001: MDDVYVVPAL LVLNWLIVVL HIVSYFCFLV LWSFFPVVIL VPTRELALQT SQVCKELGKY LNIQVMVSTG GTSLKDDIMR LYQPVHLLVG TPGRILDLTR
101: KGICVLKDCS MLVMDEADKL LAPEFQPSVE ALIHFLPPSR QLLMFSATFP VTVKEFKDKY LPRPYVINLM DELTLKGITQ YYAFVEERQK VHCLNTLFSK
201: LQINQSIIFC NSVNRVELLA KKITELGYSC FYIHAKMLQD HRNRVFHDFR NGACRNLVCT DLFTRGIDIQ AVNVVINFDF PKTSETYLHR VGRSGRYGHL
301: GLAVNLITYE DRFNLYRIEQ ELGTEIKTIP PQIDLSIYCQ

Best Arabidopsis Sequence Match ( AT2G45810.1 )
(BLAST)

001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ

Arabidopsis Description

RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.