Factsheet for Bra039312.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011009.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	Bra011009.1-P	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37067	Canola	cytosol	98.45	99.8
CDY27357	Canola	cytosol, plastid	96.91	98.43
AT2G45810.1	Thale cress	cytosol, plastid	92.84	90.91
KRH04755	Soybean	cytosol	45.84	89.43
Bra007587.1-P	Field mustard	cytosol	79.3	86.68
Bra003442.1-P	Field mustard	cytosol	79.11	85.74
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	76.21	82.08
Bra008527.1-P	Field mustard	cytosol	51.64	80.91
VIT_15s0046g03200.t01	Wine grape	cytosol	76.79	80.86
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	76.6	80.49
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	52.61	80.0
GSMUA_Achr2P10560_001	Banana	cytosol	74.85	79.63
Solyc10g017530.2.1	Tomato	nucleus	75.24	79.23
GSMUA_Achr5P12220_001	Banana	cytosol	75.24	79.06
KRH48173	Soybean	mitochondrion	76.4	79.0
KRH65096	Soybean	nucleus	76.21	78.96
KRH65098	Soybean	endoplasmic reticulum, nucleus	76.6	78.88
Bra037351.1-P	Field mustard	cytosol	77.56	78.63
KRH48170	Soybean	endoplasmic reticulum	76.4	78.53
Bra000965.1-P	Field mustard	cytosol	77.18	77.78
Os04t0533000-02	Rice	cytosol	74.66	77.51
Solyc01g094350.2.1	Tomato	nucleus	74.47	77.31
Os02t0641800-02	Rice	plasma membrane, plastid	75.24	76.57
TraesCS2B01G387200.1	Wheat	cytosol	73.5	76.15
TraesCS2A01G370200.2	Wheat	cytosol	73.5	75.85
TraesCS2D01G366700.1	Wheat	cytosol	73.89	75.2
HORVU6Hr1G060630.1	Barley	cytosol	75.24	75.1
TraesCS6A01G236800.1	Wheat	cytosol	75.05	74.19
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	72.15	74.16
EER91410	Sorghum	cytosol	72.34	73.77
TraesCS6B01G265300.1	Wheat	cytosol	74.47	73.61
TraesCS6D01G219400.1	Wheat	cytosol	74.47	73.61
Zm00001d051268_P004	Maize	extracellular	74.27	73.56
EER91411	Sorghum	cytosol	71.95	73.37
Zm00001d017384_P008	Maize	cytosol	74.08	72.95
Os10t0503700-01	Rice	plasma membrane	73.31	72.74
KRH40488	Soybean	cytosol	74.47	71.43
TraesCS1A01G174600.1	Wheat	cytosol	71.76	70.67
TraesCS1B01G189900.1	Wheat	cytosol	71.76	70.67
TraesCS1D01G164500.1	Wheat	cytosol	71.57	70.34
GSMUA_Achr11P...	Banana	cytosol	75.24	68.85
HORVU1Hr1G046020.1	Barley	cytosol	71.95	65.96
Solyc05g048850.2.1	Tomato	mitochondrion	67.5	64.99
Bra030892.1-P	Field mustard	cytosol	5.03	38.24
Bra030893.1-P	Field mustard	cytosol	28.82	36.16
Bra014365.1-P	Field mustard	cytosol	28.63	35.92
Bra021517.1-P	Field mustard	cytosol	28.63	35.92
Bra027387.1-P	Field mustard	cytosol	28.63	35.92
Bra029124.1-P	Field mustard	cytosol	28.43	35.85
Bra001530.1-P	Field mustard	cytosol	28.82	35.82
Bra037977.1-P	Field mustard	cytosol	28.43	35.68
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.01	35.13
Bra022449.1-P	Field mustard	cytosol	26.5	33.58
Bra032127.1-P	Field mustard	cytosol	26.5	33.58
Bra038231.1-P	Field mustard	cytosol	26.5	33.58
Bra023311.1-P	Field mustard	cytosol	27.66	33.49
Bra023312.1-P	Field mustard	cytosol	27.47	32.57
Bra014267.1-P	Field mustard	cytosol	25.15	32.18
Bra008984.1-P	Field mustard	cytosol	26.5	32.16
Bra008983.1-P	Field mustard	cytosol	26.5	29.03
Bra006091.1-P	Field mustard	cytosol	27.27	26.91
Bra040687.1-P	Field mustard	cytosol	24.95	26.01
Bra028547.1-P	Field mustard	cytosol	24.18	25.46
Bra023712.1-P	Field mustard	plastid	19.92	21.55
Bra016037.1-P	Field mustard	cytosol	28.82	20.5

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra039312	EnsemblPlants:Bra039312.1	EnsemblPlants:Bra039312.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M4FDZ1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF555
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002544451
SEG:seg	:	:	:	:	:

Description

AT2G45810 (E=1e-252) | DEAD/DEAH box helicase, putative

Coordinates

chrA04:+:18651137..18653554

Molecular Weight (calculated)

59180.8 Da

IEP (calculated)

8.230

GRAVY (calculated)

-0.521

Length

517 amino acids

Sequence
(BLAST)

001: MDNNNNRGRF PPGIGAPDPN FQSRNPNPNP NPPPQQFLHS RTPFPQQYVQ SRTPLPPQQQ PDAQQYVQRG YSQQNPPQQI QQQQQWSTRA QLPGNPSYVD
101: EVEKTVQSEA NNDSNNQDWK ATLKLPPRDN RYQTEDVTAT KGNEFEDYFL KRDLLRGIYE KGFEKPSPIQ EESIPIALTG SDILARAKNG TGKTGAFCIP
201: TLEKIDPENN VIQAVILVPT RELALQTSQV CKELSKYLKI EVMVTTGGTS LRDDIMRLYQ PVHLLVGTPG RILDLTKKGV CVLKDCAMLV MDEADKLLSA
301: EFQPSIEELI QFLPQNRQIL MFSATFPVTV KYFKDRYLRK PYIINLMDQL TLMGVTQYYA FVEERQKVHC LNTLFSKLQI NQSIIFCNSV NRVELLAKKI
401: TELGYSCFYI HAKMAQDHRN RVFHDFRNGA CRNLVCTDLF TRGIDIQAVN VVINFDFPRT SESYLHRVGR SGRYGHLGLA VNLVTYEDRF KMYQTEQELG
501: TEIKPIPSLI DKAIYCQ

Best Arabidopsis Sequence Match ( AT2G45810.1 )
(BLAST)

001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ

Arabidopsis Description

RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.