Factsheet for TraesCS6D01G219400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G006100.1
TraesCS3D01G004500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	TraesCS3A01G006100.1	AT1G26110.1	21798944
AT2G45810.1	TraesCS3D01G004500.1	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G265300.1	Wheat	cytosol	98.85	98.85
TraesCS6A01G236800.1	Wheat	cytosol	98.09	98.09
HORVU6Hr1G060630.1	Barley	cytosol	95.98	96.91
KRH04755	Soybean	cytosol	46.65	92.08
CDY54061	Canola	cytosol	55.45	88.96
Zm00001d051268_P004	Maize	extracellular	88.72	88.89
Zm00001d017384_P008	Maize	cytosol	88.72	88.38
CDY45702	Canola	cytosol	34.61	87.86
TraesCS2D01G366700.1	Wheat	cytosol	85.09	87.6
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	79.16	86.25
Solyc10g017530.2.1	Tomato	nucleus	80.11	85.34
Bra008527.1-P	Field mustard	cytosol	53.73	85.15
KRH48170	Soybean	endoplasmic reticulum	79.92	83.1
KRH65098	Soybean	endoplasmic reticulum, nucleus	79.73	83.07
KRH48173	Soybean	mitochondrion	79.35	83.0
Solyc01g094350.2.1	Tomato	nucleus	78.97	82.93
KRH65096	Soybean	nucleus	78.97	82.77
AT4G00660.1	Thale cress	cytosol, mitochondrion	78.78	81.58
CDY51147	Canola	cytosol	76.86	81.05
CDY07205	Canola	cytosol	75.91	80.86
CDX91901	Canola	cytosol	77.25	80.64
Bra037351.1-P	Field mustard	cytosol	78.2	80.2
Bra000965.1-P	Field mustard	cytosol	77.63	79.14
CDX74342	Canola	cytosol	77.63	78.99
Bra003442.1-P	Field mustard	cytosol	71.13	77.99
Bra007587.1-P	Field mustard	cytosol	70.36	77.8
CDY58787	Canola	cytosol	71.7	77.8
TraesCS1D01G164500.1	Wheat	cytosol	78.01	77.57
AT3G61240.1	Thale cress	cytosol	73.81	77.51
CDX71756	Canola	cytosol	70.75	77.24
CDY48935	Canola	cytosol, plastid	69.79	76.84
CDY37067	Canola	cytosol	73.61	75.49
CDY27357	Canola	cytosol, plastid	73.04	75.05
Bra039312.1-P	Field mustard	cytosol	73.61	74.47
GSMUA_Achr11P...	Banana	cytosol	80.31	74.34
AT2G45810.1	Thale cress	cytosol, plastid	74.38	73.67
Solyc05g048850.2.1	Tomato	mitochondrion	71.32	69.46
TraesCS7D01G412200.1	Wheat	golgi, nucleus	29.45	37.2
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	29.64	35.07
TraesCS2D01G554300.1	Wheat	nucleus	26.0	35.05
TraesCS6D01G401900.1	Wheat	nucleus	27.53	34.87
TraesCS2D01G553400.1	Wheat	cytosol	26.77	34.57
TraesCS3D01G204400.1	Wheat	cytosol	27.34	33.41
TraesCS1D01G451300.1	Wheat	cytosol	26.77	33.1
TraesCS5D01G532700.1	Wheat	cytosol	22.75	24.95
TraesCS4D01G272900.1	Wheat	cytosol	23.71	24.41
TraesCS3D01G530600.1	Wheat	plastid	19.12	22.27
TraesCS6D01G216300.1	Wheat	mitochondrion	18.36	17.84
TraesCS6D01G173700.3	Wheat	cytosol	25.43	9.9

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF352	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6D01G219400	EnsemblPlants:TraesCS6D01G219400.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:309579891..309585825

Molecular Weight (calculated)

59595.3 Da

IEP (calculated)

8.888

GRAVY (calculated)

-0.574

Length

523 amino acids

Sequence
(BLAST)

001: MDPRARYPPG TGNGRGGNPN YYGRGPPLSQ NNHHHHQQTS GAHQQQYVQR QPQPQPQQHH QNNHQQQHHQ NNHQQQHHQN HHHHHQQQQQ QWLRRNQINA
101: AGTSGPKVVG PPPAAVGNDP SSQDWKAQLK LPPADTRFRT EDVTATKGNE FEDYFLKREL LMGIYEKGFE NPSPIQEESI PIALTGSDIL ARAKNGTGKT
201: AAFCIPALEK IDQDKNAIQV VIVVPTRELA LQTSQVCKEL GKHLKIQVMV TTGGTSLKDD IVRLYQPVHL LVGTPGRILD LTKKGVCILK DCSMLVMDEA
301: DKLLSPEFQP SIEQLIRYLP ASRQILMFSA TFPVTVKEFK DKYLPKPYVI NLMDELTLKG ITQFYAFVEE RQKVHCLNTL FSKLQINQSI IFCNSVNRVE
401: LLAKKITELG YSCFYIHAKM LQDHRNRVFH DFRNGACRNL VCTDLFTRGI DIQAVNVVIN FDFPKSSETY LHRVGRSGRF GHLGLAVNLI TYEDRFNLYR
501: IEQELGTEIK PIPPQIDQAI YCQ

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.