Factsheet for TraesCS7D01G412200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 19786127
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G320000.1	Wheat	cytosol	99.76	99.76
TraesCS7A01G419400.1	Wheat	cytosol	99.76	99.76
Os06t0701100-02	Rice	extracellular, nucleus, plastid	98.07	98.07
GSMUA_Achr8P24670_001	Banana	cytosol	85.75	94.41
VIT_11s0016g01920.t01	Wine grape	cytosol	93.96	94.19
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	93.96	94.19
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	93.24	93.46
KRH37426	Soybean	cytosol, endoplasmic reticulum	93.24	93.46
KRH12430	Soybean	cytosol	93.24	93.46
KRH23270	Soybean	cytosol	92.51	92.74
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	92.51	92.74
KRH10048	Soybean	cytosol, endoplasmic reticulum	92.51	92.74
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	92.27	92.49
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	98.55	92.31
KRH47074	Soybean	nucleus	91.79	92.01
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	91.79	92.01
PGSC0003DMT400012518	Potato	cytosol	91.3	91.53
GSMUA_Achr10P...	Banana	cytosol	84.06	90.86
KRH44102	Soybean	nucleus	92.03	90.5
GSMUA_Achr7P19690_001	Banana	cytosol	77.05	90.37
VIT_09s0002g01760.t01	Wine grape	cytosol	92.51	87.84
TraesCS2D01G554300.1	Wheat	nucleus	59.9	63.92
TraesCS2D01G553400.1	Wheat	cytosol	61.11	62.47
TraesCS6D01G401900.1	Wheat	nucleus	62.08	62.23
TraesCS3D01G204400.1	Wheat	cytosol	36.23	35.05
TraesCS1D01G451300.1	Wheat	cytosol	35.02	34.28
TraesCS2D01G366700.1	Wheat	cytosol	37.44	30.51
TraesCS6D01G219400.1	Wheat	cytosol	37.2	29.45
TraesCS1D01G164500.1	Wheat	cytosol	35.99	28.33
TraesCS4D01G272900.1	Wheat	cytosol	34.06	27.76
TraesCS5D01G532700.1	Wheat	cytosol	31.16	27.04
TraesCS3D01G530600.1	Wheat	plastid	24.88	22.94
TraesCS6D01G216300.1	Wheat	mitochondrion	24.4	18.77
TraesCS6D01G173700.3	Wheat	cytosol	59.42	18.3

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS7D01G412200	EnsemblPlants:TraesCS7D01G412200.1	TIGR:cd00079
TIGR:cd00268	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:530679232..530680937

Molecular Weight (calculated)

46947.5 Da

IEP (calculated)

5.122

GRAVY (calculated)

-0.250

Length

414 amino acids

Sequence
(BLAST)

001: MAGMAPEGSQ FDAKNYDSKM QELLSQGETE EFFTSYDEVH ESFDDMGLQE NLLRGIYAYG FEKPSAIQQR GIVPFCKGLD VIQQAQSGTG KTATFCSGIL
101: QQLDYGLVEC QALVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILASGV HVVVGTPGRV FDMLRRQSLR PDNIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPGKIQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VEKEEWKLDT LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RGRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINYDLPTQ PENYLHRIGR SGRFGRKGVA INFVTREDER MLFDIQKFYN
401: VVIEELPANV ADLL

Best Arabidopsis Sequence Match ( AT3G13920.3 )
(BLAST)

001: MHVSLTRNSM KCELEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ LDFSLIQCQA
101: LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD QIYDIFQLLP
201: PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS RDHTVSATHG
301: DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV VEELPSNVAD
401: LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.