Factsheet for GSMUA_Achr7P19690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	92.35	88.11
GSMUA_Achr2P19480_001	Banana	cytosol	92.35	88.11
GSMUA_Achr10P...	Banana	cytosol	94.9	87.47
GSMUA_Achr8P24670_001	Banana	cytosol	92.92	87.23
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	92.92	79.42
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	92.35	78.93
VIT_11s0016g01920.t01	Wine grape	cytosol	92.07	78.69
EES04512	Sorghum	cytosol	90.93	78.29
KRH12430	Soybean	cytosol	91.5	78.21
KRH37426	Soybean	cytosol, endoplasmic reticulum	91.22	77.97
Zm00001d015251_P001	Maize	extracellular	90.37	77.8
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	90.93	77.72
Os06t0701100-02	Rice	extracellular, nucleus, plastid	90.93	77.54
Os02t0146600-01	Rice	plastid	90.65	77.29
TraesCS7A01G419400.1	Wheat	cytosol	90.65	77.29
TraesCS7B01G320000.1	Wheat	cytosol	90.65	77.29
KRH23270	Soybean	cytosol	90.37	77.24
KRH10048	Soybean	cytosol, endoplasmic reticulum	90.37	77.24
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	90.37	77.24
Zm00001d036480_P001	Maize	plasma membrane, plastid	90.37	77.05
TraesCS7D01G412200.1	Wheat	golgi, nucleus	90.37	77.05
Zm00001d014673_P001	Maize	plastid	90.37	77.05
KRH47074	Soybean	nucleus	89.52	76.51
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	89.24	76.27
PGSC0003DMT400012518	Potato	cytosol	88.67	75.79
KRH44102	Soybean	nucleus	89.8	75.3
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	92.92	75.06
VIT_09s0002g01760.t01	Wine grape	cytosol	91.22	73.85
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	91.22	72.85
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	91.22	72.85
HORVU6Hr1G020910.1	Barley	cytosol	90.93	63.56
OQU76995	Sorghum	cytosol	90.65	61.9
TraesCS6B01G144100.1	Wheat	cytosol	33.14	61.26
TraesCS6B01G144000.1	Wheat	golgi	91.22	58.44
GSMUA_Achr9P23810_001	Banana	cytosol	56.66	51.55
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	30.31	46.72
GSMUA_Achr3P27120_001	Banana	cytosol	40.51	42.94
GSMUA_Achr9P13950_001	Banana	mitochondrion	34.84	40.07
GSMUA_Achr8P05380_001	Banana	cytosol	35.98	27.43
GSMUA_Achr5P12220_001	Banana	cytosol	36.54	26.22
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	36.26	26.02
GSMUA_Achr2P10560_001	Banana	cytosol	35.69	25.93
GSMUA_Achr10P...	Banana	nucleus	34.84	25.52
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	34.28	24.3
GSMUA_Achr6P14220_001	Banana	cytosol	34.84	23.52
GSMUA_Achr11P...	Banana	cytosol	35.13	21.95
GSMUA_Achr6P27990_001	Banana	plastid	23.51	17.11
GSMUA_Achr1P01890_001	Banana	plastid	25.5	17.01

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr7G19690_001
EnsemblPlants:GSMUA_Achr7P19690_001	EnsemblPlants:GSMUA_Achr7T19690_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0TJ06	InterPro:P-loop_NTPase	PFAM:PF00270	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000294FB2D	:	:	:

Description

Eukaryotic initiation factor 4A-1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G19690_001]

Coordinates

chr7:-:22619762..22623045

Molecular Weight (calculated)

39668.7 Da

IEP (calculated)

5.671

GRAVY (calculated)

-0.231

Length

353 amino acids

Sequence
(BLAST)

001: MAGLAPEGSQ FDAHQYDAKM NDLLNADGQD FFTLYDEVHE SFDEMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGVLQ
101: QLDYGLVKCQ ALVLGPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILSSGVH VVVGTPGRVF DMLRRQSLLP DYIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PQKIQVGIFS ATMPPEALEI TRKFMNKPMR SRDHTVSSTH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VVNYDLPTQP
301: ENYLHRIGRS GRFGRKGTAI NFVTRDDDRM LLDIQRFYNV VINELPSNVA DII

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.