Factsheet for GSMUA_Achr2P19480_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	97.57	97.57
GSMUA_Achr8P24670_001	Banana	cytosol	95.95	94.41
GSMUA_Achr7P19690_001	Banana	cytosol	88.11	92.35
GSMUA_Achr10P...	Banana	cytosol	93.78	90.6
VIT_11s0016g01920.t01	Wine grape	cytosol	96.22	86.2
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	95.68	85.71
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	94.86	84.99
KRH37426	Soybean	cytosol, endoplasmic reticulum	94.86	84.99
KRH12430	Soybean	cytosol	94.86	84.99
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	94.05	84.26
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	93.78	84.02
KRH23270	Soybean	cytosol	93.51	83.78
KRH10048	Soybean	cytosol, endoplasmic reticulum	93.51	83.78
KRH47074	Soybean	nucleus	93.24	83.54
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	92.7	83.05
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	97.84	82.84
PGSC0003DMT400012518	Potato	cytosol	92.16	82.57
KRH44102	Soybean	nucleus	93.51	82.19
VIT_09s0002g01760.t01	Wine grape	cytosol	94.86	80.5
GSMUA_Achr9P23810_001	Banana	cytosol	58.65	55.93
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	32.7	52.84
GSMUA_Achr3P27120_001	Banana	cytosol	41.35	45.95
GSMUA_Achr9P13950_001	Banana	mitochondrion	34.86	42.02
GSMUA_Achr8P05380_001	Banana	cytosol	36.22	28.94
GSMUA_Achr5P12220_001	Banana	cytosol	37.03	27.85
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	36.76	27.64
GSMUA_Achr2P10560_001	Banana	cytosol	36.22	27.57
GSMUA_Achr10P...	Banana	nucleus	34.86	26.76
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	34.05	25.3
GSMUA_Achr6P14220_001	Banana	cytosol	34.86	24.67
GSMUA_Achr11P...	Banana	cytosol	35.95	23.54
GSMUA_Achr6P27990_001	Banana	plastid	24.59	18.76
GSMUA_Achr1P01890_001	Banana	plastid	25.95	18.15

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr2G19480_001
EnsemblPlants:GSMUA_Achr2P19480_001	EnsemblPlants:GSMUA_Achr2T19480_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0S9D9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002962D89	:

Description

Eukaryotic initiation factor 4A-14 [Source:GMGC_GENE;Acc:GSMUA_Achr2G19480_001]

Coordinates

chr2:-:19535149..19541751

Molecular Weight (calculated)

41819.3 Da

IEP (calculated)

6.074

GRAVY (calculated)

-0.234

Length

370 amino acids

Sequence
(BLAST)

001: MAGMTPEGSQ FDARQYDAKM NELLSQDVQD FFTSYDEVYD SFDAMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCAGILQ
101: QLDYGLVQCQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILSSGVH VVVGTPGRVF DMLRRQSLRP DNIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PSKVQVGLFS ATMPPEALEI TRKFMNKPSV IFVNTRRKVD WLTDKMRSRD HTVSATHGDM DQNTRDIIMR EFRSGSSRVL ITTDLLARGI
301: DVQQVSLVIN YDLPTQPENY LHRIGRSGRF GRKGVAINFV TRDDERMLFD IQRFYNVVIE ELPSNVADLI

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.